Comments (2)
Hi, thanks for the useful tips! I'll look at rainbowfish and mantis, also citing them in the paper.
I'll investigate the possibility of adopting the optimized color index encoding as you proposed.
Andrea
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Very nice paper indeed. For the record, "color class compression" is also used in my tool Themisto (supplement 1 of this paper https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8743562/).
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Related Issues (20)
- is there a way to get the kmer counts of the kmers in the produced unitigs? HOT 1
- different runs return different number of unitigs and distinct color subsets HOT 6
- GGCAT keeps panicking about too many open files HOT 1
- Error compiling using latest rust version HOT 2
- Using nightly Rust is problematic HOT 11
- Build fails with `error[E0635]: unknown feature proc_macro_span_shrink` HOT 1
- [Request] Can you provide binaries?
- Interaction between `-m 0` and `--prefer-memory` causes a crash HOT 1
- Installation from scratch fail with file examples HOT 2
- Using ggcat-api in an external Rust project fails to build without including `dynamic-dispatch-proc-macro` in Cargo.toml HOT 3
- Is there any way to dump the whole colormap in a readable file ? HOT 2
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- GGCAT installation fails when compiling ggcat-api HOT 2
- Error 68 : Unfinished stream HOT 2
- Same flag `-f` for both `--forward-only` and `--colored-query-output-format` options in queries HOT 1
- Problem with GGCAT when using 32 threads HOT 1
- access datasets of origin HOT 2
- Issues with -d and -c flags (ggcat doesn't find sample in large color_mapping.in file) HOT 1
- Adding GGCAT to Bioconda
- Which kmer-counter is actually used when building the graph? HOT 2
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