Comments (2)
Guilucand
commented on August 17, 2024
Hi,
I added an experimental query_colormap api function, to do what you requested.
The only caveat is that reading a single color set from the colormap is very slow (can take up to several ms), and it is much better to batch the queries in groups of subsets that have (almost) consecutive indices, especially for large datasets.
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fingels
commented on August 17, 2024
My intent was to batch the entire colormap (just like a matrix, if you will) so this should do the trick. Thanks!
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Related Issues (20)
- Compilation failed with error: `use of unstable library feature 'int_log'` HOT 1
- Plans to generate a GFA? HOT 1
- is there a way to get the kmer counts of the kmers in the produced unitigs? HOT 1
- different runs return different number of unitigs and distinct color subsets HOT 6
- GGCAT keeps panicking about too many open files HOT 1
- Error compiling using latest rust version HOT 2
- Using nightly Rust is problematic HOT 11
- Build fails with `error[E0635]: unknown feature proc_macro_span_shrink` HOT 1
- [Request] Can you provide binaries?
- Interaction between `-m 0` and `--prefer-memory` causes a crash HOT 1
- Installation from scratch fail with file examples HOT 2
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- GGCAT API crash when building many graphs in memory from the same instance HOT 2
- GGCAT installation fails when compiling ggcat-api HOT 2
- Error 68 : Unfinished stream HOT 2
- Same flag `-f` for both `--forward-only` and `--colored-query-output-format` options in queries HOT 1
- Problem with GGCAT when using 32 threads HOT 1
- access datasets of origin HOT 2
- Issues with -d and -c flags (ggcat doesn't find sample in large color_mapping.in file) HOT 1
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