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seg-reg's Introduction

configurations on linux

step1 swig

make sure you have Pipeline.i:

$swig -c++ -python Pipeline.i

step2 cmake

you now got two files :SegAndRegPipe.py and Pipeline_wrap.cxx.to generate a .so file you should run:

$cmake .
$make

then rename the .so file to _SegAndRegPipe.so

step3 invoke

just import in your python script:

>>>>>import SegAndRegPipe as sg

using with flask

run:

$ python app.py 

to start a local server.

then you can send your requests.there are two interfaces so far:

url = /seg method = POST

for segmentation(bones,table removal)

url= /reg method = POST

for regitration (PET-CET)

both interfaces need to pass raw image data.

3DimageSegmentation

Module 1 region grow with confidence

  • see RegionGrowMethod.h for details

Module 2 table removal (based on line detection)

  • see TableRemoval.h for details

Module 3 bone removal

head bone

  • threshold process ->LoG caculator(edge detection)->fusion-> close operation

body bone

  • threshold process ->close operation->hole fill filter

CT-PET Registration

method 1 multiresolution

  • see RegistrationPipe.h for details

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