Shotgun is a C++ parallel coordinate descent algorithm (standalone and Matlab MEX) for solving L1-regularized least squares and logistic regression problems. See http://arxiv.org/abs/1105.5379
License: Apache License 2.0
Hi,
shotgun/read_matrix_market.cpp
Line 79 in da03d6a
I run the shotgun_example.m but failed, MATLAB crashed down with following errors:
------------------------------------------------------------------------
abort() detected at Thu Sep 18 11:13:07 2014
------------------------------------------------------------------------
Configuration:
Crash Decoding : Disabled
Current Visual : None
Default Encoding : UTF-8
GNU C Library : 2.13 stable
MATLAB Architecture: glnxa64
MATLAB Root : /usr/local/R2014a
MATLAB Version : 8.3.0.532 (R2014a)
Operating System : Linux 3.2.0-4-amd64 #1 SMP Debian 3.2.57-3 x86_64
Processor ID : x86 Family 6 Model 62 Stepping 4, GenuineIntel
Virtual Machine : Java 1.7.0_11-b21 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode
Window System : No active display
Fault Count: 1
Abnormal termination:
abort()
Register State (from fault):
RAX = 0000000000000000 RBX = 0000000000000400
RCX = ffffffffffffffff RDX = 0000000000000006
RSP = 00007fac6cc9ee58 RBP = 00007fac6cc9f8a0
RSI = 00000000000048df RDI = 00000000000048b5
R8 = 0000000000000000 R9 = 00007fac74c7ef88
R10 = 0000000000000008 R11 = 0000000000000202
R12 = 00000000000001b3 R13 = 00007fac6cc9f180
R14 = 0000000000000085 R15 = 0000000000000007
RIP = 00007fac7eac5475 EFL = 0000000000000202
CS = 0033 FS = 0000 GS = 0000
Stack Trace (from fault):
[ 0] 0x00007fac7eac5475 /lib/x86_64-linux-gnu/libc.so.6+00205941 gsignal+00000053
[ 1] 0x00007fac7eac86f0 /lib/x86_64-linux-gnu/libc.so.6+00218864 abort+00000384
[ 2] 0x00007fac7eb0052b /lib/x86_64-linux-gnu/libc.so.6+00447787
[ 3] 0x00007fac7eb09d76 /lib/x86_64-linux-gnu/libc.so.6+00486774
[ 4] 0x00007fac7eb0d658 /lib/x86_64-linux-gnu/libc.so.6+00501336
[ 5] 0x00007fac7eb0ec00 /lib/x86_64-linux-gnu/libc.so.6+00506880 __libc_malloc+00000112
[ 6] 0x00007fac7f52fa6d /usr/local/R2014a/bin/glnxa64/../../sys/os/glnxa64/libstdc++.so.6+00387693 _Znwm+00000029
[ 7] 0x00007fac75da3e87 /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00355975 _ZN5boost6detail12shared_countC2INS_8signals26detail12grouped_listIiSt4lessIiENS_10shared_ptrINS4_15connection_bodyISt4pairINS4_15slot_meta_groupENS_8optionalIiEEENS3_4slotIFvvENS_8functionISG_EEEENS3_5mutexEEEEEEEEEPT_+00000039
[ 8] 0x00007fac75da4ac1 /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00359105 _ZN5boost8signals26detail11signal_implIFvvENS0_19optional_last_valueIvEEiSt4lessIiENS_8functionIS3_EENS8_IFvRKNS0_10connectionEEEENS0_5mutexEE16invocation_stateC2ERKNS1_12grouped_listIiS7_NS_10shared_ptrINS1_15connection_bodyISt4pairINS1_15slot_meta_groupENS_8optionalIiEEENS0_4slotIS3_S9_EESF_EEEEEERKS5_+00000065
[ 9] 0x00007fac75da4b78 /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00359288 _ZN5boost8signals26detail11signal_implIFvvENS0_19optional_last_valueIvEEiSt4lessIiENS_8functionIS3_EENS8_IFvRKNS0_10connectionEEEENS0_5mutexEEC2ERKS5_RKS7_+00000104
[ 10] 0x00007fac75da4c3a /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00359482 _ZN5boost8signals26signalIFvvENS0_19optional_last_valueIvEEiSt4lessIiENS_8functionIS2_EENS7_IFvRKNS0_10connectionEEEENS0_5mutexEEC1ERKS4_RKS6_+00000074
[ 11] 0x00007fac75da0265 /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00340581 _ZN13Mfh_MATLAB_fnC1EP11MdispatcherP13Mlm_MATLAB_fnPS_P9Mmetadataiiibbbi+00000181
[ 12] 0x00007fac75df10f5 /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00671989 _ZN8Mfh_fileC2EP11MdispatcherP8Mlm_filePS_P9Mmetadataiiibbb+00000069
[ 13] 0x00007fac74eb4eef /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02526959
[ 14] 0x00007fac74eb5377 /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02528119
[ 15] 0x00007fac74eb55c2 /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02528706
[ 16] 0x00007fac74e2120d /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+01921549 __constructor_lm_m+00000093
[ 17] 0x00007fac75dd6060 /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00561248 _ZN11Mdispatcher19create_fh_MATLAB_fnEPKcS1_+00000384
[ 18] 0x00007fac75dea8a1 /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00645281
[ 19] 0x00007fac75de65d7 /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00628183
[ 20] 0x00007fac75dd7c0a /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00568330 _ZN11Mdispatcher15build_singletonEi6mpPath+00000186
[ 21] 0x00007fac75dd7db5 /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00568757 _ZN11Mdispatcher19helper_for_lookup_TEiP14IPathInterface+00000069
[ 22] 0x00007fac75de1043 /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00606275 _ZN11Mdispatcher8lookup_TI19Mtypeidx_attributesEEP16Mfunction_handleP13Mfh_MATLAB_fniiPPT_P14IPathInterfaceNS_20CaseMismatchStrategyE+00000819
[ 23] 0x00007fac75da9e55 /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00380501
[ 24] 0x00007fac74e68ca6 /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02215078 _Z53mdFunctionHandleDispatchSelectionAnalysisWithBindingsI19Mtypeidx_attributesEP16Mfunction_handleiPKciPPT_Pi+00000182
[ 25] 0x00007fac750d58fe /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+04757758 _Z21in_is_matlab_functionPvPKvPKc+00000174
[ 26] 0x00007fac7616e689 /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01365641
[ 27] 0x00007fac76186fd2 /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01466322
[ 28] 0x00007fac7618163b /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01443387
[ 29] 0x00007fac7615e792 /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01300370
[ 30] 0x00007fac76181bc6 /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01444806
[ 31] 0x00007fac76187411 /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01467409
[ 32] 0x00007fac76188b55 /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01473365
[ 33] 0x00007fac7617320e /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01384974
[ 34] 0x00007fac76173353 /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01385299
[ 35] 0x00007fac761767bf /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01398719
[ 36] 0x00007fac76177988 /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01403272
[ 37] 0x00007fac76177f6f /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01404783
[ 38] 0x00007fac761769f6 /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01399286
[ 39] 0x00007fac7617320e /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01384974
[ 40] 0x00007fac7619b838 /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01550392
[ 41] 0x00007fac761a6c56 /usr/local/R2014a/bin/glnxa64/libmwm_parser.so+01596502 _Z11mps_M_to_IRIcEP9term_nodePbPP13variable_nodePmPS6_S6_PP9M_token_TIT_ES6_PPP9_constantPP15_M_parse_tree_TIS9_EP10_M_to_IR_TIS9_EPKS9_SP_PKNSt13make_unsignedIS9_E4typeEmN16fn_is_function_TIS9_E4typeEPvSY_N15fn_find_class_TIS9_E4typeEN16fn_is_variable_TIS9_E4typeESY_ib+00000230
[ 42] 0x00007fac74eb6fa4 /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02535332
[ 43] 0x00007fac74eb7df6 /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02538998
[ 44] 0x00007fac75df3f29 /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00683817 _ZN8Mlm_file7load_mfEv+00000361
[ 45] 0x00007fac75da784b /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00370763 _ZN13Mlm_MATLAB_fn8try_loadEv+00000059
[ 46] 0x00007fac75df086e /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00669806 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000078
[ 47] 0x00007fac74ec720e /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02601486
[ 48] 0x00007fac74e681b0 /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02212272
[ 49] 0x00007fac74e8325f /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02323039
[ 50] 0x00007fac74e87167 /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02339175
[ 51] 0x00007fac74e8526f /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02331247
[ 52] 0x00007fac74e85ec4 /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02334404
[ 53] 0x00007fac74ee330b /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02716427
[ 54] 0x00007fac75df0c5f /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00670815 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00001087
[ 55] 0x00007fac74ec720e /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02601486
[ 56] 0x00007fac74e681b0 /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02212272
[ 57] 0x00007fac74e8325f /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02323039
[ 58] 0x00007fac74e87167 /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02339175
[ 59] 0x00007fac74e8526f /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02331247
[ 60] 0x00007fac74e85ec4 /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02334404
[ 61] 0x00007fac74ee330b /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02716427
[ 62] 0x00007fac75df0c5f /usr/local/R2014a/bin/glnxa64/libmwm_dispatcher.so+00670815 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00001087
[ 63] 0x00007fac74eb6135 /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02531637
[ 64] 0x00007fac74e7d0d9 /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02298073
[ 65] 0x00007fac74e79dc7 /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02284999
[ 66] 0x00007fac74e7a193 /usr/local/R2014a/bin/glnxa64/libmwm_interpreter.so+02285971
[ 67] 0x00007fac76c23afc /usr/local/R2014a/bin/glnxa64/libmwbridge.so+00142076
[ 68] 0x00007fac76c24791 /usr/local/R2014a/bin/glnxa64/libmwbridge.so+00145297 _Z8mnParserv+00000721
[ 69] 0x00007fac7fe1592f /usr/local/R2014a/bin/glnxa64/libmwmcr.so+00489775 _ZN11mcrInstance30mnParser_on_interpreter_threadEv+00000031
[ 70] 0x00007fac7fdf6b6d /usr/local/R2014a/bin/glnxa64/libmwmcr.so+00363373
[ 71] 0x00007fac7fdf6be9 /usr/local/R2014a/bin/glnxa64/libmwmcr.so+00363497
[ 72] 0x00007fac804c5e33 /usr/local/R2014a/bin/glnxa64/libmwservices.so+01646131 _ZN10eventqueue18UserEventQueueImpl5flushEv+00000611
[ 73] 0x00007fac745921ed /usr/local/R2014a/bin/glnxa64/libmwuix.so+00221677
[ 74] 0x00007fac8056b6ea /usr/local/R2014a/bin/glnxa64/libmwservices.so+02324202
[ 75] 0x00007fac8056ba24 /usr/local/R2014a/bin/glnxa64/libmwservices.so+02325028
[ 76] 0x00007fac8056757f /usr/local/R2014a/bin/glnxa64/libmwservices.so+02307455
[ 77] 0x00007fac8056c9b5 /usr/local/R2014a/bin/glnxa64/libmwservices.so+02329013
[ 78] 0x00007fac8056cde7 /usr/local/R2014a/bin/glnxa64/libmwservices.so+02330087
[ 79] 0x00007fac8056d4c0 /usr/local/R2014a/bin/glnxa64/libmwservices.so+02331840 _Z25svWS_ProcessPendingEventsiib+00000080
[ 80] 0x00007fac7fdf7098 /usr/local/R2014a/bin/glnxa64/libmwmcr.so+00364696
[ 81] 0x00007fac7fdf73bf /usr/local/R2014a/bin/glnxa64/libmwmcr.so+00365503
[ 82] 0x00007fac7fdf228f /usr/local/R2014a/bin/glnxa64/libmwmcr.so+00344719
[ 83] 0x00007fac7ee24b50 /lib/x86_64-linux-gnu/libpthread.so.0+00027472
[ 84] 0x00007fac7eb6f0ed /lib/x86_64-linux-gnu/libc.so.6+00901357 clone+00000109
If this problem is reproducible, please submit a Service Request via:
http://www.mathworks.com/support/contact_us/
A technical support engineer might contact you with further information.
Thank you for your help.
I would like to point out that identifiers like "__SHOTGUN_COMMON_" and "_CAS_ARRAY_" do not fit to the expected naming convention of the C++ language standard.
Would you like to adjust your selection for unique names?
Complie Error when execute "make cversion_debug" on linux.
read_matrix_market.cpp: In function 'void convert_2_mat(const char*, shotgun_data*)':
read_matrix_market.cpp:87:25: error: 'class std::vector<sparse_array>' has no member named 'add'
prob->A_cols[J].add(I, val);
^
read_matrix_market.cpp:88:25: error: 'class std::vector<sparse_array>' has no member named 'add'
prob->A_rows[I].add(J, val);
Should replace line 47-49 in read_matrix_market.cpp
prob->A_cols[J].add(I, val);
prob->A_rows[I].add(J, val);
by:
prob->A_cols->at(J).add(I, val);
prob->A_rows->at(I).add(J, val);
Also, need add
#include <getopt.h>
in mm_lasso.cpp.
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