The 16S
and ITS
repositories contain the BASH scripts used to run QIIME2 steps,
including relevant parameters for demultiplexing, denoising, clustering, phylogeny
building, and diversity analyses. Also included are .tsv files of the clustering feature
tables, and Newick phylogenies.
EnvironmentalAnalyses
includes the .csv files containing environmental data relevant to
the RHF fieldsites, as well as an R script (AspectAnalysis.R
) that pulls all of these
together into straightforward correlations.