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biophysweb's Introduction

BioPhysWeb


Interactive tool to explore body temperatures of organisms.

Author: UW Biology- Huckley Lab
License: MIT

Build Status

Description

Part of TrEnCh project, and aims to show the impact of climate change on various organisms.

Installation (Ubuntu)

sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
sudo add-apt-repository 'deb [arch=amd64,i386] https://cran.rstudio.com/bin/linux/ubuntu xenial/'
sudo apt-get update
sudo apt-get install r-base
sudo su - -c "R -e \"install.packages(c('shiny','leaflet','RColorBrewer','dplyr'), repos = 'http://cran.rstudio.com/')\""

# We need to install devtools as we are going to use experimental leaflet heatmaps

sudo apt-get -y build-dep libcurl4-gnutls-dev
sudo apt-get -y install libcurl4-gnutls-dev

sudo su - -c "R -e \"install.packages('devtools', repos = 'http://cran.rstudio.com/')\""
sudo su - -c "R -e \"devtools::install_github('bhaskarvk/leaflet.extras')\""
 

Installing the app

git clone https://github.com/trenchproject/biophysweb.git
cd biophysweb
nohup R CMD BATCH main.R  > server.out 2>&1&


Future Direction

Incorporating below organisms:

  • Grasshopper
  • Mussels
  • Limpets

Citation

If you use this package, We would appreciate a citation.

DOI

DOI

Notes

If you plan to host the Shiny App, remember to use the host(use local IP) and port option.

biophysweb's People

Contributors

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Stargazers

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Forkers

uwbiology

biophysweb's Issues

Travis build fails with missing 'rgdal'

'rgdal' pkg is used, and results in build failure.

Modify travis.yml

before_install:

  • sudo apt-get -qq update
  • sudo apt-get install -y libgdal1-dev libproj-dev

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