aimclub / gefest Goto Github PK

There are several issues that was postponed in #42. They are label as TODO.

Task to obtain mandatory documentation:

• Host in documentation read-the-docs;
• Create quick-start guide;
• #40
• #36
• Create extended tutorial for beginners;
• Create advanced tutorial for developes;

Formal deadline: 01.09.2022

Synthetic structure optimisation case with COMSOL-like simulator should be added.

Unit tests should be added

Several domain for optimization should be supported (for advanced cell trap case)

• В Breakwaters, варианты кейсов с оптимизаторами SPEA2 и DE конфигурационный файл перезаписывается некорректно, что приводит к поломке файла (INPUT или bw_example_cfg) .
• Скрипты для Breakwaters не учитывают ограничения по непересечению с существующими объектами (порт, точка замера высоты волн, фарватер). Однако, это предусмотрено функционалом. Пример с суррогатной моделью:
  
• Запуск кейсов из aimclub/GEFEST/cases в конфигурации SWAN требуется файл конфигурации "INPUT", однако он отсутствует по пути (gefest/tools/estimators/simulators/swan/swan_model/), а вместо него находится "bw_example_cfg". В последнем открытом Pull requests предложено переименовать "INPUT" в "bw_example_cfg". Предполагаю, что название для конфигурационного файла осталось "INPUT" для того, чтобы была возможность запускать примеры из ITMO-NSS-team/GEFEST. Необходимо унифицировать название конфигурационного файла без потери возможности воспроизведения кейсов в обоих репозиториях.

To the journal one

The following error was facesd in paper-exp branch:

Traceback (most recent call last):
File "shapely\speedups_speedups.pyx", line 247, in shapely.speedups._speedups.geos_linearring_from_py
AttributeError: 'list' object has no attribute 'array_interface'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "D:/GEFEST/cases/synthetic/analysis_of_applicability/number_of_vertices.py", line 90, in
result = optimize(task_setup=task_setup,
File "D:\GEFEST\gefest\core\opt\optimize.py", line 18, in optimize
_, best = GA(
File "D:\GEFEST\gefest\core\opt\GA\GA.py", line 20, in solution
self._pop.extend(self.reproduce(self._pop))
File "D:\GEFEST\gefest\core\opt\GA\base_GA.py", line 95, in reproduce
child_gen = self.mutation(structure=child_gen,
File "D:\GEFEST\gefest\core\opt\operators\mutation.py", line 55, in mutation
new_structure = get_pop_worker(domain=domain)
File "D:\GEFEST\gefest\core\opt\operators\initial.py", line 44, in get_pop_worker
structure = postprocess(structure, domain)
File "D:\GEFEST\gefest\core\algs\postproc\resolve_errors.py", line 33, in postprocess
elif out_of_bound(local_structure, domain):
File "D:\GEFEST\gefest\core\algs\geom\validation.py", line 33, in out_of_bound
if not domain.geometry.is_contain_poly(poly, domain_poly):
File "D:\GEFEST\gefest\core\geometry\geometry_2d.py", line 95, in is_contain_poly
geom_poly = GeomPolygon([self._pt_to_geom(pt) for pt in poly_1.points])
File "D:\GEFEST\venv_new\lib\site-packages\shapely\geometry\polygon.py", line 243, in init
ret = geos_polygon_from_py(shell, holes)
File "D:\GEFEST\venv_new\lib\site-packages\shapely\geometry\polygon.py", line 509, in geos_polygon_from_py
ret = geos_linearring_from_py(shell)
File "shapely\speedups_speedups.pyx", line 341, in shapely.speedups._speedups.geos_linearring_from_py
ValueError: A LinearRing must have at least 3 coordinate tuples

Simple case of mult-objective breakwaters optimization with SWAN should be implemented and added to cases.

The following error occurs in crossover:

How to reproduce:

is_closed = True
geometry = Geometry2D(is_closed=is_closed)
domain = Domain(allowed_area=[(0, 0),
                              (0, 300),
                              (300, 300),
                              (300, 0),
                              (0, 0)],
                geometry=geometry,
                max_poly_num=20,
                min_poly_num=1,
                max_points_num=20,
                min_points_num=5,
                is_closed=is_closed)

task_setup = Setup(domain=domain)

# Optimizing stage
start = timeit.default_timer()
optimized_structure = optimize(task_setup=task_setup,
                               objective_function=partial(multi_loss,
                                                          expected_poly_num=expected_poly_num),
                               pop_size=100,
                               max_gens=100)

Note:

bug occurs more frequently if max_poly_num is large.

The following GOLEM feature should be used: aimclub/GOLEM#82

Setup for https://github.com/nccr-itmo/FEDOT can be used as an example.

Simple case of single-objective cell trap optimization with COMSOL should be implemented and added to cases.

• Base classes should be created
• Simple example to demonstrate the PoC

According with passed unit-tests, created Polygons due processing by validation and resolve_errors function might have only 2 points after that.

This fact returnes an issue due processing Polygons on the Shapely side

The source code of some examples can be non-actual now. They should be validated and fixed if necssary