scripts used in Global Echinochloa Genomes Project

• genome assembly
  • scaffolding of tetraploid E. oryzicola using DipHiC
  • scaffolding of hexaploid E. colona using DipHiC
  • scaffolding of hexaploid E. crus-galli using DipHiC
• population structure
  • variation calling
  • tree, pca and structure
• selection scan
• gene flow

For any questions or more details, please contact at [email protected].

Cite: Wu, D., Shen, E., Jiang, B. et al. Genomic insights into the evolution of Echinochloa species as weed and orphan crop. Nat Commun 13, 689 (2022). https://doi.org/10.1038/s41467-022-28359-9