Name: Ahmed M Moustafa
Type: User
Company: Children's Hospital of Philadelphia
Bio: Pharmacist, Bioinformatics, Molecular Epidemiology, Microbial Genomics, Phylogenetics
Twitter: Ahmed_Microbes
Location: Philadelphia, USA
Ahmed M Moustafa's Projects
ARTIC nanopore protocol for nCoV2019 novel coronavirus
A scalable bacterial genome assembly, annotation and analysis pipeline
Conda recipes for the bioconda channel.
Masks recombinant regions in an alignment based on ClonalFrameML output
Notebooks for learning deep learning
A hands on forking, cloning, pulling, pushing, merging tutorial.
Gene Novelty Unit-based Virus Identification for SARS-CoV-2
Phylodynamic estimation of nCoV incidence and prevalence
Protein evolution and annotation project
Programming for Biology Class @ CSHL 2022
Recombination Detection using Comparative Analysis of Regional Patterns of Exact Match Targets
Scripts and data for "The impact of the tree prior on estimating clock rates during epidemic outbreaks" (PNAS 2018)
Tools for the Urban Metagenomics Tutorial by Trelify
WhatsGNU: a tool for identifying proteomic novelty
upload big files to Zenodo using cURL, jq and bash