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fsinc's Introduction

fast sinc transform

A python implementation of the fast sinc-transform described by Greengard et. al., 2006 as implemented by Hannah Lawrence in fast-sinc-transform. Utilizes FINUFFT and fastgl (modified to use numba).

Theory and details are described in more detail in doc/fsinc.md (pdf).

There are a couple of examples in examples/, tests can be run with pytest. To show plots during testing use pytest --plot.

Installation

pip install .

Running local tests

From the fsinc top directory, make sure you have pytest and pytest-benchmark installed in your python enviroment, then do:

PYTHONPATH=fsinc pytest

The path is needed so local fastgl module is seen, apparently (please help fix this). To do a subset of tests, eg just 1d ones, use:

PYTHONPATH=fsinc pytest -s -k "sinc1d"

Here the -s is if you want to insert print statements into the tests and see the outputs.

Building docs

Set up the environment in doc/environment.yml, install enough of tex-live and run make to generate pdf using pandoc.

References

Greengard, L., Lee, J. Y., & Inati, S. (2006). The fast sinc transform and image reconstruction from nonuniform samples in k-space. Communications in Applied Mathematics and Computational Science, 1(1), 121โ€“131. https://doi.org/10.2140/camcos.2006.1.121

fsinc's People

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