We perform stochastic rule based simulations using two solvers - SpringSaLaD and NFsim. We perform multiple stochastic trials and analyze them to get average properties of the system.

• We define the springsalad model using the in-built graphical interface and then launch multiple simulations using the batch file called "submit_ssalad.sh". The data analysis part is summarized by "ssalad_analysis.ipynb" inside the springsalad folder.
• We define the NFsim model using the Virtual Cell graphical interface and then launch multiple simulations using the batch file called "submit_nfsim.sh". The data analysis part is summarized by "NFsim_analysis.ipynb" inside the NFsim folder.

To use the code, simply clone the repository to your local machine.