Comments (4)
According to that log Truvari executed the task successfully.
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the summary is a json file. json to pandas dataframes is possible. truvari vcf2df
also can convert the benchmarking output vcfs to dataframes.
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Hi @ACEnglish,
Is there a better method to convert summary files into data frames for benchmarking purposes?
Thank you
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truvari_results.txt
Is there a way to convert these results into a dataframe format for benchmarking purposes? I'm working with 10 flow cells, using 5 SV callers and 3 aligners, and need to calculate averages to plot a Precision-Recall graph. Thank you.
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Related Issues (20)
- Support vector for intra-sample merge HOT 6
- some questions about the results in fp.vcf.gz
- some questions about the results in fp.vcf.gz HOT 1
- Suggested minor documentation changes
- Truvari, STRs and Expansion Hunter - Query HOT 2
- Bug in benchmarking HOT 4
- Request: truvari collapse --keep option to mantain the ALT sequence HOT 1
- Inquiry on the Determination of Representative Structural Variants in Merged VCF Sets HOT 2
- Truvari Collapse error HOT 1
- Same SV failed to merge HOT 1
- Q: stratify produces all-zero columns HOT 2
- INFO/END field not carried through from input VCF to output VCF HOT 3
- How to handle the "./." genotype in the merged project-level VCF? HOT 2
- Question: meaning of the parameter MINHAPLEN HOT 2
- Collapsed INFO column HOT 1
- wrong collapse? HOT 1
- Issue with MAMnet and Truvari Collapse Parameter Optimization HOT 1
- is it possible to collapse SVs within known groups HOT 7
- Unclear permission denied error when running Truvari bench HOT 5
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