Different display with Mol2 and SDF about 3dmol.js HOT 8 CLOSED

The code is we use is:

<div class='viewer_3Dmoljs' data-href='/static/data/FILE.mol2' data-type='mol2' data-backgroundcolor='0xffffff' data-style='stick'></div>

and

<div class='viewer_3Dmoljs' data-href='/static/data/FILE.sdf' data-type='sdf' data-backgroundcolor='0xffffff' data-style='stick'></div>

from 3dmol.js.

I can't reproduce this. Are you using the latest and greatest 3Dmol.js?

Showing hydrogens is the default for everything but pdb files (cause I don't like it for pdb files). Hiding hydrogens wasn't working for sdf and mol2s though I just committed a fix.

from 3dmol.js.

We're using the No-jQuery verison of 3dMol, because it's conflicting with jQuery if we import it ourselves separately.

from 3dmol.js.

Testing it with the latest build of 3Dmol.js from http://3dmol.csb.pitt.edu/build/3Dmol.js fixes the issue, but it breaks jQuery otherwise due to namespace conflicts.

from 3dmol.js.

Why not use the nojquery version? Are you saying that the most recent nojquery version doesn't work but the jquery included one does?

from 3dmol.js.

Switching from the CDN noquery version the hydrogens show.

from 3dmol.js.

That fixed it! We changed from

<script src="http://cdn.jsdelivr.net/3dmol.js/latest/3Dmol-nojquery-min.js"></script>

to

<script src="http://3Dmol.csb.pitt.edu/build/3Dmol-nojquery.js"></script>

for our CDN and that fixed everything.

from 3dmol.js.

Linking to 3dmol.csb.pitt.edu gives the the very latest version. The jsdeliver version is only updated when I tag a release. My recommendation would be to link to the 3dmol version for now as you develop the site. That way if there are any bug fixes or features you need you can pick them up right away. Once your site is in a happy place, I can tag a release, and you can switch to the more stable jsdeliver, CDN hosted version.

from 3dmol.js.