Comments (4)
xiang-jun
commented on June 1, 2024
Is there any progress for supporting a MODEL/ENDMDL delineated ensemble of PDB structures? As an example of use-cases I am interested in, 3Dmol.js currently overlaps the 4 base triplets. As shown below, 3Dmol.js takes them as a single structure, leading to erroneous linakges.
Upon my request, pv has already implemented Support for displaying a MODEL/ENDMDL ensemble. Another reference is ChemDoodle.MovieCanvas3D or ChemDoodle.SlideshowCanvas, even though the ChemDoodle Web Components library does not support a multi-model PDB file either.
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dkoes
commented on June 1, 2024
Ah, the pdb parser wasn't doing what it was suppose to and only read a single model. I've committed a fix (please check with your file if possible).
6fdc4ef
Full multi-model support is coming Real Soon Now. You will be either to load multiple models into a single model as frames or load them as separate model objects.
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xiang-jun
commented on June 1, 2024
Thanks for the quick fix. I've checked and verify that the PDB parser now reads correctly the first model. I am looking for full multi-model support in 3Dmol.js.
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dkoes
commented on June 1, 2024
Multi model support was implemented a while ago.
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Related Issues (20)
- Visualizing multiple protein structures in the same viewer HOT 3
- Not showing Hydrogen atoms HOT 4
- Is it possible to have post-translational modifications (PTMs) features in 3Dmol? HOT 1
- Discrepancy in Atom Rendering Between 3Dmol.js and VESTA for Al1Cd2_H.cif File HOT 4
- .render() is not showing updated representation of models HOT 2
- [BUG] defaultcolors not applied when using addModelsAsFrames HOT 1
- py3Dmol is not working [BUG] HOT 4
- [BUG] Double bonds rendered out of plane (CID: 243, 2244) HOT 2
- Support wireframe and opacity for addIsoSurface in VRML Export HOT 2
- [BUG] Crystal supercell displays in a very weird way HOT 10
- Enable Model Translation on Right-Click and Mouse Movement. HOT 3
- Can't select properly, nor generate cartoon & multiple structures HOT 9
- Assign Property to selection, select and colour by property HOT 2
- View multiple models with absolute positions (i.e. no centering) HOT 8
- Stick representation for IONS HOT 2
- [BUG] WRONG BONDS BEING DRAWN HOT 8
- Opening MANY models efficiently HOT 3
- PRMTOP needs to parse residue names
- Highlighting specific residues HOT 7
- use less CPU for animations HOT 3
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