Comments (9)
This looks like a way of turning JavaScript and Python objects and other data-types into cross-compatible text. How does this translate into a molecular file format, or will it be used in some other way?
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pse is a pymol session file that includes both the molecular data and (unlike all other formats) the style information. It is output as a python pickle file. First we have to be able to unpickle the data, then we need to interpret the pymol data structures to render an identical scene.
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Is there a specification for this? Could you give me a bunch of example files?
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I did a quick search for a specification and couldn't find anything. I think I will just have to analyze the contents of a bunch of files.
from 3dmol.js.
Here's another pickle library
https://github.com/jlaine/node-jpickle
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As a starting point for this would i just go into the parsers.js file and create a parsers.pse function?
from 3dmol.js.
Yes
from 3dmol.js.
Well actually, first you need to reverse engineer the file format
from 3dmol.js.
Can i have an example of a file that would be presented to the program. I know that they are pickled files, but what would they contain objects, dictionaries, arrays ?
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Related Issues (20)
- Visualizing multiple protein structures in the same viewer HOT 3
- Not showing Hydrogen atoms HOT 4
- Is it possible to have post-translational modifications (PTMs) features in 3Dmol? HOT 1
- Discrepancy in Atom Rendering Between 3Dmol.js and VESTA for Al1Cd2_H.cif File HOT 4
- .render() is not showing updated representation of models HOT 2
- [BUG] defaultcolors not applied when using addModelsAsFrames HOT 1
- py3Dmol is not working [BUG] HOT 4
- [BUG] Double bonds rendered out of plane (CID: 243, 2244) HOT 2
- Support wireframe and opacity for addIsoSurface in VRML Export HOT 2
- [BUG] Crystal supercell displays in a very weird way HOT 10
- Enable Model Translation on Right-Click and Mouse Movement. HOT 3
- Can't select properly, nor generate cartoon & multiple structures HOT 9
- Assign Property to selection, select and colour by property HOT 2
- View multiple models with absolute positions (i.e. no centering) HOT 8
- Stick representation for IONS HOT 2
- [BUG] WRONG BONDS BEING DRAWN HOT 8
- Opening MANY models efficiently HOT 3
- PRMTOP needs to parse residue names
- Highlighting specific residues HOT 7
- use less CPU for animations HOT 3
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