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alanlhutchison-pyjtk's Introduction

Jonckheere-Terpstra Kendall Cycling Test

A Python Scientific Computing Package

Quickstart:

Try: t2ahc% ./run_JTKCYCLE.py --help

TODO:

  • write great documentation
  • write test cases for should_repattern option
  • write test cases fast_k_score function

Reference:

Hughes, Hogenesch, and Kornacker (2010). "JTK_CYCLE: An efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets." Journal of Biological Rhythms. 25 (5): 372-380. 2010.

Dependencies:

  • Python (> 2.7.3)
  • NumPy (> 1.6.1)

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