Topic: electron-microscopy Goto Github
Some thing interesting about electron-microscopy
Some thing interesting about electron-microscopy
electron-microscopy,This repository is official implementation of "EM-net: Deep learning for electron microscopy image segmentation" on Google Colab.
User: akhadangi
Home Page: https://www.biorxiv.org/content/10.1101/2020.02.03.933127v1
electron-microscopy,Axon/Myelin segmentation using Deep Learning
Organization: axondeepseg
Home Page: https://axondeepseg.rtfd.io/
electron-microscopy,Workflow for Simulation and Automatic Semantic Segmentation of Electron Microscopy Images
Organization: bamresearch
electron-microscopy,Scripts and Tools for Electron Microscopy Image Analysis.
User: brisvag
electron-microscopy,Bayesian Particle Instance Segmentation for Electron Microscopy Image Quantification (JCIM 2021).
User: by256
Home Page: https://doi.org/10.1021/acs.jcim.0c01455
electron-microscopy,Electron Microscopy Particle Segmentation Dataset
User: by256
Home Page: https://doi.org/10.1021/acs.jcim.0c01455
electron-microscopy,ImageDataExtractor 2.0 - a Python library for electron microscopy image quantification.
User: by256
Home Page: https://imagedataextractor.org
electron-microscopy,A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks, based on Theano
Organization: elektronn
electron-microscopy,A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data
Organization: elektronn
electron-microscopy,Imagej macro to calculate the MTF based on a knife edge measurement
User: emx77
electron-microscopy,Package for analysing particles in electron microscopy data sets.
Organization: epsic-dls
electron-microscopy,ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.
User: frangakislab
Home Page: https://frangakis.biophysik.org/
electron-microscopy,Package to make analysis of transmission electron microscopy images simple.
User: gabriel-ing
electron-microscopy,Scalable Optical Flow-based Image Montaging and Alignment
Organization: google-research
electron-microscopy,Python library for reading and writing scientific data format
Organization: hyperspy
Home Page: https://hyperspy.org/rosettasciio
electron-microscopy,Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
Organization: i2pc
Home Page: http://scipion.i2pc.es
electron-microscopy,Python program for automated electron diffraction data collection
Organization: instamatic-dev
Home Page: https://instamatic.readthedocs.io/
electron-microscopy,Python module to read/write SerialEM navigator files.
Organization: instamatic-dev
electron-microscopy,Deep neural network for low-dose electron micrograph denoising
User: jeffrey-ede
electron-microscopy,Partial scanning transmission electron microscopy with deep learning
User: jeffrey-ede
electron-microscopy,A CTF Simulation Web App
Organization: jianglab
Home Page: https://jiang.bio.purdue.edu/ctfsimulation
electron-microscopy,OpenCL accelerated multislice simulation for electron microscopy.
User: jjppeters
Home Page: https://jjppeters.github.io/clTEM/
electron-microscopy,Implementation of geometric phase analysis (GPA) in C++
User: jjppeters
Home Page: http://jjppeters.github.io/Strainpp/
electron-microscopy,Experimental tech-demo for PhD thesis in Scientific Markdown; official:
User: katrinleinweber
Home Page: http://kops.uni-konstanz.de/handle/123456789/34342
electron-microscopy,A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
User: kuixu
electron-microscopy,Collection of algorithms and routines for (ultrafast) electron diffraction and scattering
User: laurentrdc
Home Page: http://scikit-ued.readthedocs.io
electron-microscopy,High Throughput Electron Microscopy Image Processing Software
Organization: lbem-ch
Home Page: http://www.focus-em.org
electron-microscopy,Open pixelated STEM framework
Organization: libertem
Home Page: https://libertem.github.io/LiberTEM/
electron-microscopy,Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.
User: lukmuk
electron-microscopy,PLEASE: The Python Low-energy Electron Analysis SuitE - Enabling rapid analysis and visualization of LEEM and LEED Data.
User: mgrady3
electron-microscopy,Oxford Instruments NanoAnalysis HDF5 File Specification
Organization: oinanoanalysis
electron-microscopy,A curated list of awesome computational cryo-EM methods.
User: phonchi
electron-microscopy,A curated list of awesome computational cryo-ET methods.
User: phonchi
electron-microscopy,Functions for analysis of high resolution electron microscopy and spectroscopy data.
User: pinkshnack
Home Page: https://temul-toolkit.readthedocs.io
electron-microscopy,pyCHIP is a tool for segmentation and feature classification in transmission electron microscopy (TEM) images based on a small support set of user-provided examples.
Organization: pnnl
electron-microscopy,Deep and Machine Learning for Microscopy
Organization: pycroscopy
Home Page: https://atomai.readthedocs.io/
electron-microscopy,Scientific analysis of nanoscale materials imaging data
Organization: pycroscopy
Home Page: https://pycroscopy.github.io/pycroscopy/about.html
electron-microscopy,A single package for analyzing atomic resolution STEM, 4D-STEM and STEM-EELS datasets, along with basic STEM simulation functionality
Organization: pycroscopy
electron-microscopy,Python interface for Monte Carlo simulation programs
Organization: pymontecarlo
electron-microscopy,Manipulate and mine Relion .star files
User: sami-chaaban
electron-microscopy,Read and write Neuroglancer datasets programmatically.
Organization: seung-lab
Home Page: https://twitter.com/thundercloudvol
electron-microscopy,STEM Moiré GPA software converting a STEM Moiré hologram into 2D deformation maps
User: slimpotatoes
electron-microscopy,Quantitative Data Analysis for spectroscopic LEEM
User: tadejong
electron-microscopy,A python package collecting an assortment of geometric phase analysis algorithms and tools to analyse regular (moiré) lattices.
User: tadejong
electron-microscopy,Singular value thresholding for denoising time-resolved microscopy
User: tjof2
Home Page: https://tjof2.github.io/pgure-svt/
electron-microscopy,A set of tools for aligning and reconstructing electron tomography data
Organization: usnistgov
electron-microscopy,Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
Organization: volume-em
electron-microscopy,Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
Organization: volume-em
Home Page: https://empanada.readthedocs.io/en/latest/empanada-napari.html
electron-microscopy,Felix: Bloch wave method diffraction pattern simulation software
Organization: warwickmicroscopy
electron-microscopy,Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
User: yuelongwu
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