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16spip

16sPIP: A Comprehensive Analysis Pipeline for Rapid Pathogen Detection in Clinical Samples Based on 16S Metagenomic Sequencing

assemble_qc

Eukaryotic Genome Assembly Evaluation Software

augustus

Genome annotation with AUGUSTUS

augustus_model

Gene prediction model trained by augustus

bacteria-id

Source code and demos for "Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning"

baiyiampl

Conduct correlation analysis of microorganisms and metabolism, microorganisms and environmental factors

bioanalysis

biocrispr

biodb

Common bioinformatics database construction

biomodule

bioscript

Biological common script database

biotool

bioyicgmlst

cgMLST analysis of bacteria

bioyimamas

Combined Analysis of Microbial Metabolism

bt-btt

磁力網站U3C3介紹以及域名更新

companion

Pipeline for automatic eukaryotic parasite annotation

cox1

Mitochondrial cox1 gene database

data_analysis

Process the data (excel)

dbcog

Build COG database

deepac

Predicting pathogenic potentials of short DNA reads with reverse-complement deep neural networks.

deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

docktool

Docker monitoring tool

filter_ngs

Filtering erroneous data from mgi (MGISEQ) sequencing

findmge

Prediction of movable genetic elements（MGE）

findpul

Polysaccharide Utilization Loci Prediction

findtelomeres

A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files

flair

Full-Length Alternative Isoform analysis of RNA

flye

De novo assembler for single molecule sequencing reads using repeat graphs

fullampl

Obtain the full-length amplicon sequence from pacbio CCS.

gcircos

Draw a genome circle map