Bozitao Zhong's Projects
Collection of trials, discussions, and tricks of AlphaFold3.
A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib
My guide to install Alphafold locally
AlphaFold Unofficial Wiki
Python based blade runner text game/unfinished/roguelike/self-designed
Protein design pipeline for using Chroma, a protein structure generation model, for various tasks
Monte Carlo simulated annealing to optimize the CMAP potentials in molecular mechanics force fields with reweighting calculation
personal webpage for my curriculum vitae
This repository contains implementations and illustrative code to accompany DeepMind publications
DNA plotting library for Python
This is a cell automata program based on python. Currently for learning python basics
Work in progress
Course project for SJTU CS420 Machine Learning course
Gitalk is a modern comment component based on Github Issue and Preact.
This project is to craw down some iGEM information from the iGEM website, the result is for statistics.
incaRNA is a deep learning model to predict RNA secondary structure and model confidence
Some interesting methods to visulize genes/genome/proteins
HVQE implementation of Kagome lattice. This project can calculate both ground state energy and exicted energies.
Zuricho's personal knowledge base
A LaTeX-style for Typora. This theme makes Typora files look like LaTeX
Store my jupyter notebooks to learn lectures and projects
A modern curriculum vitae class for LaTeX
PTM forcefield development repo.
Machine learning, in numpy
Personal website for Bozitao Zhong
Some interesting ideass, suggestions are welcomed
ParaFold - under development
Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
Using biopython & matplotlib to draw different ramachandran plots. The phi psi angle are from AMBER forcefield simulation result & CPPTRAJ analyse