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zstephens's Projects

corgi icon corgi

CORGi - COmplex Rearrangement analysis with Graph-search

exogene icon exogene

A workflow for identifying viral integrations in both short and long read data

extract_region icon extract_region

a quick script for extracting portions of reads that span specified reference coordinates

filt-sv icon filt-sv

A workflow for filtering and annotating SVs from PacBio CLR long reads

neat-repeat icon neat-repeat

NEAT-Repeat, a reference assembly repetition finder

pacbio-tools icon pacbio-tools

Various scripts and workflows for processing PacBio data

pb-motif icon pb-motif

PB-Motif: A method for identifying gene/pseudogene rearrangements with PacBio long reads

telogator icon telogator

A method for measuring chromosome-specific telomere length from long reads

telogator2 icon telogator2

Allele-specific telomere analysis from long reads

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