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Name: Zachary Nicolaou
Type: User
Bio: I am a postdoctoral researcher at the University of Washington studying complex systems.
Name: Zachary Nicolaou
Type: User
Bio: I am a postdoctoral researcher at the University of Washington studying complex systems.
Code to simulate arrays of pendula exhibiting anharmonic responses
AUTO is a publicly available software for continuation and bifurcation problems in ordinary differential equations originally written in 1980 and widely used in the dynamical systems community.
Python code to simulate inviscid Faraday waves with finite elements
Code to simulate rings of Janus oscillators used in "Multifaceted Dynamics of Janus Oscillator Networks," Z. G. Nicolaou, D. Eroglu, and A. E. Motter Phys. Rev. X 9, 011017 (2019).
Integrate a large network of Kuramoto oscillators on a gpu with a random or user-specified adjacency matrix
Integrate Newton's equations on a GPU
Pseudospectral code to integrate the complex Ginzburg-Landau equation in two dimensions used in Z.G. Nicolaou, H. Riecke, and A.E. Motter, Chimera states in continuous media: Existence and distinctness, Phys. Rev. Lett. 119, 244101 (2017).
A package for the sparse identification of nonlinear dynamical systems from data
Calculate transition rate matrix from Cantera model, "Non-normality and non-monotonic dynamics in complex reaction networks," Z. G. Nicolaou, T. Nishikawa, S. B. Nicholson, J. R. Green, and A. E. Motter, Phys. Rev. Research 2, 043059 (2020)
Code to simulate rate constant estimates in incomplete complex chemistry networks, "Missing links as a source of variable constants in complex reaction networks," Z. G. Nicolaou and A. E. Motter, Phys. Rev. Research (2020)
Random networks of chemical reactions
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