zmmason Goto Github PK
Name: Zachary Mason
Type: User
Bio: Biomolecular Engineering and Bioinformatics - Coastal Resilience Lab, University of California, Santa Cruz
Location: Santa Cruz, CA
Zachary Mason's Projects
binf
Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
data-visualization
Numpy, Scipy, Matplotlib, and Inkscape packages used on scientific data to generate publication-quality figures
genetree
(Preliminary Program) Methods used to create phylogenetic gene trees linking significant genes of various viral strains
gff-parser-tools
Bioinformatic analysis tools (transcriptomic, genomic, proteomics), file conversion, gene expression profiles, FASTA generator, Gene-Ontology, CDS, SNPs, introns, transcripts, GO-terms, Pfam parser, FASTA reader, Molar Extinction, charge, nt-aa composition, Isoelectric point, Mass Extinction, molecular weight, Codon Composition, ORF reader, Reverse Compliment,
machine-learning
Regression/Classification models, Statistical analysis, Statistical plotting, SKLearn,
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