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calcofi-muri

Repository for the MURI Module #2

edna_spatial_temporal_variation

All code used in the paper Investigating temporal and spatial variation of eDNA in a nearshore rocky reef environment. Written by Taylor Ely, Paul Barber, and Zack Gold

eeb201

eeb234

EEB 234 Git Hub Repository for assignments

fairy-shrimp-metabarcoding

Code to conduct data analysis for eDNA Metabarcoding bioassessment of endangered fairy shrimp (Branchinecta spp.)

fishcard

California Fish specific MiFish 12S Reference Barcode Database

gradientforest

Read-only mirror of "gradientforest" from r-forge SVN.

gruinard_decon

An eDNA metabarcoding decontamination pipeline

indonesia_edna

Environmental DNA in a Global Biodiversity Hotspot: Lessons from Coral Reef Fish Diversity Across the Indonesian Archipelago

metabarcodings_signal_from_noise

Code and data for analysis Distinguishing Signal from Noise: Understanding Patterns of Non-Detections to Inform Accurate Quantitative Metabarcoding

noaa_r_course

port-of-la-lb-project

Code for analyzing CALeDNA Project with the Port of Los Angeles and the Port of Long Beach

pre-bootcamp-hw

Pre-Quantitative Boot Camp Homeworks

primertree

PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs

rstudiocloud

scorpion-smr-edna-metabarcoding

Code and Input Data for: eDNA metabarcoding as a biomonitoring tool for marine protected areas

surfzone-edna-ms

A Comparison of Biomonitoring Methodologies for Surf Zone Fish Communities

week-2

Week 2 Eli Holmes R course