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Harry Zhang's Projects

brats2018-tumor-segmentation icon brats2018-tumor-segmentation

We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D UNet by adding additional brain parcellation with original MR images.

camicroscope icon camicroscope

Digital pathology image viewer with support for human/machine generated annotations and markups.

cavia icon cavia

Code for "Fast Context Adaptation via Meta-Learning"

d3 icon d3

Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:

datadockercontainer icon datadockercontainer

Dockerfile for the Data layer of caMicroscope. Installs Mongo, Bindaas and mounts appropriate directories from the file system.

dira icon dira

Official PyTorch Implementation for DiRA: Discriminative, Restorative, and Adversarial Learning for Self-supervised Medical Image Analysis - CVPR 2022

dl-docker icon dl-docker

An all-in-one Docker image for deep learning. Contains all the popular DL frameworks (TensorFlow, Theano, Torch, Caffe, etc.)

glandseg icon glandseg

codebase for prostate gland segmentation model

image_segmentation icon image_segmentation

Pytorch implementation of U-Net, R2U-Net, Attention U-Net, and Attention R2U-Net.

imageloader icon imageloader

APIs for loading whole slide images onto caMicroscope.

imageloader.py icon imageloader.py

Python utility that also does image loading. Used for large scale image loading where images are already available and all that is needed is to extract and store the metadata.

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