Related Issues (20)
- Partial execution of the workflow HOT 7
- bug: CI is not using the specified Python version HOT 3
- bug: issue with snakefmt in snakemake workflow catalog HOT 1
- bug: CI tests are not working due to incompatible python and mamba version HOT 1
- Increase exposure by publishing ZARP on tool/workflow registries HOT 11
- Sort gtf -issue with alfa
- Add optional installation of ZARP-cli HOT 5
- feat: support GTF formats other than ensembl
- feat: Remove PCR duplicates
- feat: add support for cloud execution
- feat: replace BAM by CRAM format
- chore: Move function definitions from top of Snakefile to separate module
- feat: RO-crate packaging of workflow and metadata
- Snakemake update causes rule wiring issues
- Release notes categories
- changelog notes protected branch HOT 1
- SRA download workflow does not support DRR, ERR identifiers HOT 1
- fix: segfault upon SRA download workflow reruns
- fix: htsinfer.smk treats 'nan' values in sample table wrongly HOT 1
- fix: e-flag accessed before defined error
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