Comments (7)
Since this issue is directly interfering with my CI tests on #53 I have already fixed it there.
I just updated jinja2
version in our main and root conda env. recipes :)
The PR is still WIP but will mark it ready soon.
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Thanks. I was also able to reproduce the issue. Indeed the jinja2 version update will fix this.
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#52 (comment)
Ubuntu 20.04.04
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This is very bizarre since "The steps to reproduce" are executed within the CI (job: integration-conda
) and it passes there, right?
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Whats OS do you use?
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More strange update:
Now the CI in #53 fails for the same reason. However CI in #50 did not threw that error...
Hmm...
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I will have a look at the conda tests.
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Related Issues (20)
- Release notes categories
- changelog notes protected branch HOT 1
- SRA download workflow does not support DRR, ERR identifiers HOT 1
- fix: segfault upon SRA download workflow reruns
- fix: htsinfer.smk treats 'nan' values in sample table wrongly HOT 1
- fix: e-flag accessed before defined error
- feat(htsinfer): Interface log and cluster log directories via config.yaml
- test(htsinfer): add test to CI
- fix(ci): snakemake-graphs-format test fails
- fix: wildcard inside f-strings not recognized in newer snakemake versions HOT 4
- fix: Cutadapt compression level problem
- build: upgrade tool versions HOT 1
- SRA download workflow does not execute with Singularity HOT 1
- chore: address Pandas warnings
- bug: kallisto genome quantification fails HOT 1
- fix: too little RAM allocated for BED sorting
- ci: warnings due to outdated Actions
- docs: describe ZARP outputs and how to use/explore them
- fix(SRA download): rule get layout often fails HOT 6
- Multi-organism analysis HOT 1
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