yx-xu Goto Github PK

buencolors

R package of colors for the Buenrostro Lab

chipseqspikeinfree

A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

clam

CLIP-seq Analysis of Multi-mapped reads

clipper

A tool to identify CLIP-seq peaks

dapars

DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)

diamond

Accelerated BLAST compatible local sequence aligner.

ea-utils

Automatically exported from code.google.com/p/ea-utils

epiteome

Simultaneous Detection of Transposable Element Insertion Sites and their DNA Methylation Levels from Plant Genomes

grp7-mediate-translational-regulation

Unraveling the role of GRP7 in mediating translational regulation in ABA signaling and drought stress

icount

iCount, protein-RNA interaction analytics

leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

macs

MACS -- Model-based Analysis of ChIP-Seq

manorm

A robust model for quantitative comparison of ChIP-Seq data sets.

notedata

markdown note shareing

omniclip

omniCLIP is a CLIP-Seq peak caller

peakachu

Peak calling tool for CLIP-seq data

repeatmasker

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

seacr

SEACR: Sparse Enrichment Analysis for CUT&RUN

splitreader

Split-read pipeline for the identification of non-reference TE insertions with TSDs

t-lex3

tepid

Transposable element polymorphism identification

wheat-spike-development

xtail

Genome-wide assessment of differential translations with ribosome profiling data

yx-xu

Config files for my GitHub profile.