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Comments (31)

shubhayanroychowdhury avatar shubhayanroychowdhury commented on June 25, 2024 1

Check your environment and I suggest you to run again this command
image

And then run this command LiCSBAS_plot_ts.py -i TS_GEOCml1clip/cum_filt.h5 &
Earlier I have also faced this problem.

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yumorishita avatar yumorishita commented on June 25, 2024

Please attache the full log.

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shubhayanroychowdhury avatar shubhayanroychowdhury commented on June 25, 2024

@yumorishita
Hi, I have faced same problem.
Screenshot from 2023-08-16 18-05-24

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yumorishita avatar yumorishita commented on June 25, 2024

Please use batch_LiCSBAS.sh. The log file will be automatically generated.
The error is because the lat/lon values specified for -g option is outside of the data.

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shubhayanroychowdhury avatar shubhayanroychowdhury commented on June 25, 2024

@yumorishita
Actually, I'm attempting to run manually step-by-step. Yesterday, I processed the data, and everything went smoothly. I have no idea why this particular problem is occurring today. However, I'll use batch_LiCSBAS.sh and inform you. Thank you for your time and consideration.

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shubhayanroychowdhury avatar shubhayanroychowdhury commented on June 25, 2024

@yumorishita
Thank you so much. Now it is working.

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nssuthar16 avatar nssuthar16 commented on June 25, 2024

Today , it did went smoothly but earlier when i was using g location as lat/lon i was clippin length to width 3000 and 46000 number as length was in negative it was causing an error. I input them as long/lat and it worked smoothly but length component i got was only 150.

Later , I am getting an error in this step.

You can display the derived time series and velocity:

LiCSBAS_plot_ts.py -i TS_GEOCml1clip/cum_filt.h5 &

error is
(miniconda3-latest/envs/licsbas) neeraj@DESKTOP-B5IRKDL:/LiCSBAS/056A_05855_131313$ LiCSBAS_plot_ts.py -i TS_GEOCml1clip/cum_filt.h5 &
[1] 1177
(miniconda3-latest/envs/licsbas) neeraj@DESKTOP-B5IRKDL:
/LiCSBAS/056A_05855_131313$ LiCSBAS_plot_ts.py: command not found

[1]+ Exit 127 LiCSBAS_plot_ts.py -i TS_GEOCml1clip/cum_filt.h5

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nssuthar16 avatar nssuthar16 commented on June 25, 2024

Still I am getting the same error. If possible can you show me your terminal code so I can see where i am getting wrong in following procedure, so I can also find the result.

(miniconda3-latest/envs/licsbas) neeraj@DESKTOP-B5IRKDL:/LiCSBAS$ pwd
/home/neeraj/LiCSBAS
(miniconda3-latest/envs/licsbas) neeraj@DESKTOP-B5IRKDL:
/LiCSBAS$ source /home/neeraj/LiCSBAS/bashrc_LiCSBAS.sh
(miniconda3-latest/envs/licsbas) neeraj@DESKTOP-B5IRKDL:/LiCSBAS$ LiCSBAS_plot_ts.py -i TS_GEOCml1clip/cum_filt.h5 &
[1] 1516
(miniconda3-latest/envs/licsbas) neeraj@DESKTOP-B5IRKDL:
/LiCSBAS$
LiCSBAS_plot_ts.py ver1.13.4 20210910 Y. Morishita
LiCSBAS_plot_ts.py -i TS_GEOCml1clip/cum_filt.h5

No TS_GEOCml1clip/cum_filt.h5 found!

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nssuthar16 avatar nssuthar16 commented on June 25, 2024

(miniconda3-latest/envs/licsbas) neeraj@DESKTOP-B5IRKDL:~/LiCSBAS/056A_05855_131313$ bash batch_LiCSBAS.sh

Start step: 01
End step: 16
Log file: log/202308181036batch_LiCSBAS_01_16.log

LiCSBAS01_get_geotiff.py ver1.6.3 20201207 Y. Morishita
LiCSBAS01_get_geotiff.py -s 20190101 -e 20221230

Frame ID is 056A_05855_131313

056A_05855_131313.geo.E.tif already exist. Skip download.
056A_05855_131313.geo.N.tif already exist. Skip download.
056A_05855_131313.geo.U.tif already exist. Skip download.
056A_05855_131313.geo.hgt.tif already exist. Skip download.

Download baselines
baselines, 6.67KB, 1s, 6.67KB/s
Download network.png
network.png, 591.56KB, 2s, 295.78KB/s
Download metadata.txt
metadata.txt, 219.0B, 1s, 219.0B/s

056A_05855_131313.geo.mli.tif already exist. Skip.

Download geotiff of unw and cc
345 IFGs available from 20190104 to 20221214
Checking existing unw and cc (4 parallel, may take time)...
345 unw already downloaded
0 unw will be downloaded
345 cc already downloaded
0 cc will be downloaded

Elapsed time: 00h 03m 24s

LiCSBAS01_get_geotiff.py Successfully finished!!

Output directory: /home/neeraj/LiCSBAS/056A_05855_131313/GEOC

LiCSBAS02_ml_prep.py ver1.7.4 20201119 Y. Morishita
LiCSBAS02_ml_prep.py -i GEOC -n 1

Create E.geo
E.geo created

Create N.geo
N.geo created

Create U.geo
U.geo created

Create slc.mli
slc.mli[.png] created

Create hgt
hgt[.png] created

Create unw and cc
345/345 unw and cc already exist. Skip

Copy baselines file
ERROR: bperp for 20220512 not found!
baselines file found, but not complete. Make dummy

Elapsed time: 00h 00m 02s

LiCSBAS02_ml_prep.py Successfully finished!!

Output directory: GEOCml1

LiCSBAS05op_clip_unw.py ver1.2.5 20210105 Y. Morishita
LiCSBAS05op_clip_unw.py -i GEOCml1 -o GEOCml1clip -g 79.50/79.65/30.45/30.65

Area to be clipped:
0:3096/0:2705 -> 424:575/2152:2353
79.0763889/82.1713865/30.0976687/32.8016666 ->
79.5003886/79.6503884/30.4496685/30.6496683
Width/Length: 3096/2705 -> 151/201

Clip E.geo
Clip N.geo
Clip U.geo
Copy baselines
Clip hgt
Recreate hgt.png
Clip slc.mli
Recreate slc.mli.png

Clip unw and cc
345/345 clipped unw and cc already exist. Skip

Elapsed time: 00h 00m 00s

LiCSBAS05op_clip_unw.py Successfully finished!!

Output directory: GEOCml1clip

LiCSBAS11_check_unw.py ver1.3.3 20210402 Y. Morishita
LiCSBAS11_check_unw.py -d GEOCml1clip

coh_thre : 0.05
unw_cov_thre : 0.3

Size : 151 x 201

Reading unw and cc data...
0/345th unw to identify valid area...
100/345th unw to identify valid area...
200/345th unw to identify valid area...
300/345th unw to identify valid area...
0/345th cc and unw...
100/345th cc and unw...
200/345th cc and unw...
/home/neeraj/LiCSBAS/bin/LiCSBAS11_check_unw.py:232: RuntimeWarning: Mean of empty slice
coh_avg_ifg.append(np.nanmean(coh[bool_valid])) # Use valid area only
300/345th cc and unw...

35/345 ifgs are discarded from further processing.
ifg dates unw_cov coh_av
20190104_20190128 0.285 0.056
20190104_20190221 0.270 0.065
20190128_20190221 0.270 0.063
20190221_20190329 0.241 0.060
20190621_20190808 0.279 0.054
20190703_20190808 0.269 0.051
20190901_20200323 0.176 0.055
20190913_20200311 0.139 0.051
20190913_20200323 0.185 0.053
20190925_20200311 0.199 0.057
20190925_20200323 0.247 0.057
20191031_20191218 0.290 0.062
20191124_20191218 0.276 0.057
20200311_20200627 0.212 0.060
20200416_20200709 0.177 0.052
20200428_20200709 0.225 0.055
20200428_20200721 0.181 0.053
20200522_20200709 0.289 0.058
20200522_20200721 0.257 0.060
20200709_20200814 0.277 0.053
20210809_20210821 0.000 nan
20210809_20210902 0.000 nan
20210809_20210914 0.000 nan
20210926_20211101 0.050 0.051
20211008_20211101 0.084 0.108
20211020_20211101 0.091 0.137
20211101_20211113 0.063 0.073
20211101_20211125 0.050 0.058
20211101_20211207 0.048 0.051
20220816_20220921 0.312 0.040
20220828_20220921 0.376 0.046
20220909_20220921 0.310 0.040
20220921_20221003 0.331 0.042
20220921_20221015 0.338 0.042
20220921_20221027 0.341 0.042
Traceback (most recent call last):
File "/home/neeraj/LiCSBAS/bin/LiCSBAS11_check_unw.py", line 356, in
sys.exit(main())
^^^^^^
File "/home/neeraj/LiCSBAS/bin/LiCSBAS11_check_unw.py", line 331, in main
plot_lib.plot_network(ifgdates, bperp, [], pngfile)
File "/home/neeraj/LiCSBAS/LiCSBAS_lib/LiCSBAS_plot_lib.py", line 285, in plot_network
ax.grid(b=True, which='major')
File "/home/neeraj/.pyenv/versions/miniconda3-latest/envs/licsbas/lib/python3.11/site-packages/matplotlib/axes/_base.py", line 3194, in grid
self.xaxis.grid(visible, which=which, **kwargs)
File "/home/neeraj/.pyenv/versions/miniconda3-latest/envs/licsbas/lib/python3.11/site-packages/matplotlib/axis.py", line 1660, in grid
self.set_tick_params(which='major', **gridkw)
File "/home/neeraj/.pyenv/versions/miniconda3-latest/envs/licsbas/lib/python3.11/site-packages/matplotlib/axis.py", line 932, in set_tick_params
kwtrans = self._translate_tick_params(kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/neeraj/.pyenv/versions/miniconda3-latest/envs/licsbas/lib/python3.11/site-packages/matplotlib/axis.py", line 1076, in _translate_tick_params
raise ValueError(
ValueError: keyword grid_b is not recognized; valid keywords are ['size', 'width', 'color', 'tickdir', 'pad', 'labelsize', 'labelcolor', 'zorder', 'gridOn', 'tick1On', 'tick2On', 'label1On', 'label2On', 'length', 'direction', 'left', 'bottom', 'right', 'top', 'labelleft', 'labelbottom', 'labelright', 'labeltop', 'labelrotation', 'grid_agg_filter', 'grid_alpha', 'grid_animated', 'grid_antialiased', 'grid_clip_box', 'grid_clip_on', 'grid_clip_path', 'grid_color', 'grid_dash_capstyle', 'grid_dash_joinstyle', 'grid_dashes', 'grid_data', 'grid_drawstyle', 'grid_figure', 'grid_fillstyle', 'grid_gapcolor', 'grid_gid', 'grid_in_layout', 'grid_label', 'grid_linestyle', 'grid_linewidth', 'grid_marker', 'grid_markeredgecolor', 'grid_markeredgewidth', 'grid_markerfacecolor', 'grid_markerfacecoloralt', 'grid_markersize', 'grid_markevery', 'grid_mouseover', 'grid_path_effects', 'grid_picker', 'grid_pickradius', 'grid_rasterized', 'grid_sketch_params', 'grid_snap', 'grid_solid_capstyle', 'grid_solid_joinstyle', 'grid_transform', 'grid_url', 'grid_visible', 'grid_xdata', 'grid_ydata', 'grid_zorder', 'grid_aa', 'grid_c', 'grid_ds', 'grid_ls', 'grid_lw', 'grid_mec', 'grid_mew', 'grid_mfc', 'grid_mfcalt', 'grid_ms']
(miniconda3-latest/envs/licsbas) neeraj@DESKTOP-B5IRKDL:~/LiCSBAS/056A_05855_131313$

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shubhayanroychowdhury avatar shubhayanroychowdhury commented on June 25, 2024

Instead of running batch file, can you run all steps manually!
step_1 LiCSBAS01_get_geotiff.py -f 124D_04854_171313 -s 20160909 -e 20180508 (change the values according to your needs)
step_2 LiCSBAS02_ml_prep.py -i GEOC/ -o GEOCml1/ -n 1
step_3 LiCSBAS03op_GACOS.py -i GEOCml1/ -o GEOCgacos/ -g GACOS/ --fillhole
step_4 LiCSBAS05op_clip_unw.py -i GEOCgacos/ -o GEOCclip/ -g 79/80/30/31

step_5 LiCSBAS11_check_unw.py -d GEOCclip/
step_6 LiCSBAS12_loop_closure.py -d GEOCclip/ -l 3 (change the value according your needs)
step_7 LiCSBAS13_sb_inv.py -d GEOCclip/ -t TS_GEOCclip/
step_8 LiCSBAS14_vel_std.py -t TS_GEOCclip/
step_9 LiCSBAS15_mask_ts.py -t TS_GEOCclip/ -c 0.05 -u 1.5 -v 100 -T 1 -g 10 -s 7.5 -i 40 -l 30 -r 8 (change the value according your needs)
step_10 LiCSBAS16_filt_ts.py -t TS_GEOCclip/ -r 2 --hgt_linear --hgt_min 200 --hgt_max 3000 (change the value according your needs)

For time series plotting:
step_11 LiCSBAS_plot_ts.py -i TS_GEOCclip/cum_filt.h5 --i2 TS_GEOCclip/cum.h5

You may use the above commands and see the velocity map.

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yumorishita avatar yumorishita commented on June 25, 2024

The three errors you showed are different. The first one was solved by source. The second one is because the whole process did not finish. For the third error, please see #244 (comment).

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nssuthar16 avatar nssuthar16 commented on June 25, 2024

LiCSBAS03op_GACOS.py -i GEOCml1/ -o GEOCgacos/ -g GACOS/ --fillhole

ERROR: No GACOS/ dir exists!
I am getting this error in step 3.
I am new in this can you elaborate it then It will be really helpful for me. you can drop your email so I can contact you there if it's okay with you.

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yumorishita avatar yumorishita commented on June 25, 2024

I recommend using batch_LiCSBAS.sh.

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nssuthar16 avatar nssuthar16 commented on June 25, 2024

With batch processing still I am unable to get proper results.

I am getting this error while plotting.

(miniconda3-latest/envs/licsbas) neeraj@DESKTOP-B5IRKDL:/LiCSBAS/056A_05855_131313$ ls
GEOC GEOCml1 GEOCml1clip TS_GEOCml1clip batch_LiCSBAS.sh log
(miniconda3-latest/envs/licsbas) neeraj@DESKTOP-B5IRKDL:
/LiCSBAS/056A_05855_131313$ LiCSBAS_plot_ts.py -i TS_GEOCml1clip/cum_filt.h5
LiCSBAS_plot_ts.py: command not found
(miniconda3-latest/envs/licsbas) neeraj@DESKTOP-B5IRKDL:~/LiCSBAS/056A_05855_131313$

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nssuthar16 avatar nssuthar16 commented on June 25, 2024

Is there any video available of this work , that will help me a lot in understanding it fully.
You can guide me via google meet if it's suitable to you.

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nssuthar16 avatar nssuthar16 commented on June 25, 2024

In batch processing i am getting error of No TS_GEOCclip/cum_filt.h5 found!

I tried downgrading my matplotlib too but it is not happening and ending with this error

note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for matplotlib
Running setup.py clean for matplotlib
Failed to build matplotlib
ERROR: Could not build wheels for matplotlib, which is required to install pyproject.toml-based projects

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yumorishita avatar yumorishita commented on June 25, 2024

Please upload the full log of the batch processing.

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nssuthar16 avatar nssuthar16 commented on June 25, 2024

LiCSBAS01_get_geotiff.py ver1.6.3 20201207 Y. Morishita
LiCSBAS01_get_geotiff.py -s 20190101 -e 20221230

Frame ID is 056A_05855_131313

Download 056A_05855_131313.geo.E.tif
056A_05855_131313.geo.E.tif, 24.02MB, 69s, 356.45KB/s
Download 056A_05855_131313.geo.N.tif
056A_05855_131313.geo.N.tif, 24.02MB, 74s, 332.36KB/s
Download 056A_05855_131313.geo.U.tif
056A_05855_131313.geo.U.tif, 24.02MB, 57s, 431.48KB/s
Download 056A_05855_131313.geo.hgt.tif
056A_05855_131313.geo.hgt.tif, 22.05MB, 108s, 209.1KB/s

Download baselines
baselines, 6.67KB, 1s, 6.67KB/s
Download network.png
network.png, 591.56KB, 3s, 197.19KB/s
Download metadata.txt
metadata.txt, 219.0B, 1s, 219.0B/s

Searching latest epoch for mli...

0/118

20221214 found as latest.
Donwnloading 20221214.geo.mli.tif as 056A_05855_131313.geo.mli.tif...
056A_05855_131313.geo.mli.tif, 18.49MB, 122s, 155.18KB/s

Download geotiff of unw and cc
345 IFGs available from 20190104 to 20221214
Checking existing unw and cc (4 parallel, may take time)...
0 unw already downloaded
345 unw will be downloaded
0 cc already downloaded
345 cc will be downloaded

Download unw (4 parallel)...
Donwnloading 20190104_20190116 (1/345)...
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20220723_20220816.geo.unw.tif, 18.45MB, 163s, 115.92KB/s
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20221003_20221027.geo.unw.tif, 17.48MB, 188s, 95.2KB/s

Download cc (4 parallel)...
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20190329_20190422.geo.cc.tif, 5.09MB, 26s, 200.35KB/s
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20190410_20190422.geo.cc.tif, 5.08MB, 11s, 472.72KB/s
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Elapsed time: 02h 24m 28s

LiCSBAS01_get_geotiff.py Successfully finished!!

Output directory: /home/neeraj/LiCSBAS/056A_05855_131313/GEOC

LiCSBAS02_ml_prep.py ver1.7.4 20201119 Y. Morishita
LiCSBAS02_ml_prep.py -i GEOC -n 1

Create E.geo
E.geo created

Create N.geo
N.geo created

Create U.geo
U.geo created

Create slc.mli
slc.mli[.png] created

Create hgt
hgt[.png] created

Create unw and cc
4 parallel processing...
0/345th IFG...
70/345th IFG...
50/345th IFG...
30/345th IFG...
10/345th IFG...
80/345th IFG...
60/345th IFG...
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310/345th IFG...
290/345th IFG...
270/345th IFG...
340/345th IFG...
320/345th IFG...
300/345th IFG...
280/345th IFG...

Create slc.mli.par

Create EQA.dem_par

Copy baselines file
ERROR: bperp for 20220512 not found!
baselines file found, but not complete. Make dummy

Elapsed time: 00h 05m 57s

LiCSBAS02_ml_prep.py Successfully finished!!

Output directory: GEOCml1

LiCSBAS05op_clip_unw.py ver1.2.5 20210105 Y. Morishita
LiCSBAS05op_clip_unw.py -i GEOCml1 -o GEOCml1clip -g 79.50/79.65/30.45/30.65

Area to be clipped:
0:3096/0:2705 -> 424:575/2152:2353
79.0763889/82.1713865/30.0976687/32.8016666 ->
79.5003886/79.6503884/30.4496685/30.6496683
Width/Length: 3096/2705 -> 151/201

Clip E.geo
Clip N.geo
Clip U.geo
Copy baselines
Clip hgt
Recreate hgt.png
Clip slc.mli
Recreate slc.mli.png

Clip unw and cc
4 parallel processing...
0/345th unw...
100/345th unw...
200/345th unw...
300/345th unw...

Elapsed time: 00h 01m 25s

LiCSBAS05op_clip_unw.py Successfully finished!!

Output directory: GEOCml1clip

LiCSBAS11_check_unw.py ver1.3.3 20210402 Y. Morishita
LiCSBAS11_check_unw.py -d GEOCml1clip

coh_thre : 0.05
unw_cov_thre : 0.3

Size : 151 x 201

Reading unw and cc data...
0/345th unw to identify valid area...
100/345th unw to identify valid area...
200/345th unw to identify valid area...
300/345th unw to identify valid area...
0/345th cc and unw...
100/345th cc and unw...
200/345th cc and unw...
/home/neeraj/LiCSBAS/bin/LiCSBAS11_check_unw.py:232: RuntimeWarning: Mean of empty slice
coh_avg_ifg.append(np.nanmean(coh[bool_valid])) # Use valid area only
300/345th cc and unw...

35/345 ifgs are discarded from further processing.
ifg dates unw_cov coh_av
20190104_20190128 0.285 0.056
20190104_20190221 0.270 0.065
20190128_20190221 0.270 0.063
20190221_20190329 0.241 0.060
20190621_20190808 0.279 0.054
20190703_20190808 0.269 0.051
20190901_20200323 0.176 0.055
20190913_20200311 0.139 0.051
20190913_20200323 0.185 0.053
20190925_20200311 0.199 0.057
20190925_20200323 0.247 0.057
20191031_20191218 0.290 0.062
20191124_20191218 0.276 0.057
20200311_20200627 0.212 0.060
20200416_20200709 0.177 0.052
20200428_20200709 0.225 0.055
20200428_20200721 0.181 0.053
20200522_20200709 0.289 0.058
20200522_20200721 0.257 0.060
20200709_20200814 0.277 0.053
20210809_20210821 0.000 nan
20210809_20210902 0.000 nan
20210809_20210914 0.000 nan
20210926_20211101 0.050 0.051
20211008_20211101 0.084 0.108
20211020_20211101 0.091 0.137
20211101_20211113 0.063 0.073
20211101_20211125 0.050 0.058
20211101_20211207 0.048 0.051
20220816_20220921 0.312 0.040
20220828_20220921 0.376 0.046
20220909_20220921 0.310 0.040
20220921_20221003 0.331 0.042
20220921_20221015 0.338 0.042
20220921_20221027 0.341 0.042
Traceback (most recent call last):
File "/home/neeraj/LiCSBAS/bin/LiCSBAS11_check_unw.py", line 356, in
sys.exit(main())
^^^^^^
File "/home/neeraj/LiCSBAS/bin/LiCSBAS11_check_unw.py", line 331, in main
plot_lib.plot_network(ifgdates, bperp, [], pngfile)
File "/home/neeraj/LiCSBAS/LiCSBAS_lib/LiCSBAS_plot_lib.py", line 285, in plot_network
ax.grid(b=True, which='major')
File "/home/neeraj/.pyenv/versions/miniconda3-latest/envs/licsbas/lib/python3.11/site-packages/matplotlib/axes/_base.py", line 3194, in grid
self.xaxis.grid(visible, which=which, **kwargs)
File "/home/neeraj/.pyenv/versions/miniconda3-latest/envs/licsbas/lib/python3.11/site-packages/matplotlib/axis.py", line 1660, in grid
self.set_tick_params(which='major', **gridkw)
File "/home/neeraj/.pyenv/versions/miniconda3-latest/envs/licsbas/lib/python3.11/site-packages/matplotlib/axis.py", line 932, in set_tick_params
kwtrans = self._translate_tick_params(kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/neeraj/.pyenv/versions/miniconda3-latest/envs/licsbas/lib/python3.11/site-packages/matplotlib/axis.py", line 1076, in _translate_tick_params
raise ValueError(
ValueError: keyword grid_b is not recognized; valid keywords are ['size', 'width', 'color', 'tickdir', 'pad', 'labelsize', 'labelcolor', 'zorder', 'gridOn', 'tick1On', 'tick2On', 'label1On', 'label2On', 'length', 'direction', 'left', 'bottom', 'right', 'top', 'labelleft', 'labelbottom', 'labelright', 'labeltop', 'labelrotation', 'grid_agg_filter', 'grid_alpha', 'grid_animated', 'grid_antialiased', 'grid_clip_box', 'grid_clip_on', 'grid_clip_path', 'grid_color', 'grid_dash_capstyle', 'grid_dash_joinstyle', 'grid_dashes', 'grid_data', 'grid_drawstyle', 'grid_figure', 'grid_fillstyle', 'grid_gapcolor', 'grid_gid', 'grid_in_layout', 'grid_label', 'grid_linestyle', 'grid_linewidth', 'grid_marker', 'grid_markeredgecolor', 'grid_markeredgewidth', 'grid_markerfacecolor', 'grid_markerfacecoloralt', 'grid_markersize', 'grid_markevery', 'grid_mouseover', 'grid_path_effects', 'grid_picker', 'grid_pickradius', 'grid_rasterized', 'grid_sketch_params', 'grid_snap', 'grid_solid_capstyle', 'grid_solid_joinstyle', 'grid_transform', 'grid_url', 'grid_visible', 'grid_xdata', 'grid_ydata', 'grid_zorder', 'grid_aa', 'grid_c', 'grid_ds', 'grid_ls', 'grid_lw', 'grid_mec', 'grid_mew', 'grid_mfc', 'grid_mfcalt', 'grid_ms']

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yumorishita avatar yumorishita commented on June 25, 2024

Please see #244 (comment).

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shubhayanroychowdhury avatar shubhayanroychowdhury commented on June 25, 2024

LiCSBAS03op_GACOS.py -i GEOCml1/ -o GEOCgacos/ -g GACOS/ --fillhole

ERROR: No GACOS/ dir exists! I am getting this error in step 3. I am new in this can you elaborate it then It will be really helpful for me. you can drop your email so I can contact you there if it's okay with you.

You need to add --get_gacos

step_1 LiCSBAS01_get_geotiff.py -f 124D_04854_171313 -s 20160909 -e 20180508 --get_gacos

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nssuthar16 avatar nssuthar16 commented on June 25, 2024

I used batch file and used LiCSBAS2 for processing. It went well but when i did plotting there is an errror after plotting. Why this error or is it normal ?

/home/neeraj/LiCSBAS2/bin/LiCSBAS_plot_ts.py:456: DeprecationWarning: product is deprecated as of NumPy 1.25.0, and will be removed in NumPy 2.0. Please use prod instead.
refvalue_vel = np.nanmean((velmask)[refy1:refy2+1, refx1:refx2+1])
/home/neeraj/LiCSBAS2/bin/LiCSBAS_plot_ts.py:457: DeprecationWarning: product is deprecated as of NumPy 1.25.0, and will be removed in NumPy 2.0. Please use prod instead.
vmin_auto = np.nanpercentile(vel
mask, 100-auto_crange)
/home/neeraj/LiCSBAS2/bin/LiCSBAS_plot_ts.py:458: DeprecationWarning: product is deprecated as of NumPy 1.25.0, and will be removed in NumPy 2.0. Please use prod instead.
vmax_auto = np.nanpercentile(velmask, auto_crange)
/home/neeraj/LiCSBAS2/bin/LiCSBAS_plot_ts.py:482: DeprecationWarning: product is deprecated as of NumPy 1.25.0, and will be removed in NumPy 2.0. Please use prod instead.
data = vel
mask-np.nanmean((velmask)[refy1:refy2+1, refx1:refx2+1])
/home/neeraj/LiCSBAS2/bin/LiCSBAS_plot_ts.py:734: MatplotlibDeprecationWarning: Setting data with a non sequence type is deprecated since 3.7 and will be remove two minor releases later
pax2.set_data(jj, ii)
/home/neeraj/LiCSBAS2/bin/LiCSBAS_plot_ts.py:783: DeprecationWarning: product is deprecated as of NumPy 1.25.0, and will be removed in NumPy 2.0. Please use prod instead.
vel1p = vel[ii, jj]-np.nanmean((vel
mask)[refy1:refy2, refx1:refx2])
/home/neeraj/LiCSBAS2/bin/LiCSBAS_plot_ts.py:803: DeprecationWarning: product is deprecated as of NumPy 1.25.0, and will be removed in NumPy 2.0. Please use prod instead.
vel2p = vel2[ii, jj]-np.nanmean((vel2*mask)[refy1:refy2, refx1:refx2])
Traceback (most recent call last):
File "/home/neeraj/.pyenv/versions/miniconda3-latest/envs/licsbas/lib/python3.11/site-packages/matplotlib/cbook/init.py", line 309, in process
func(*args, **kwargs)
TypeError: 'RectangleSelector' object is not callable
Traceback (most recent call last):
File "/home/neeraj/.pyenv/versions/miniconda3-latest/envs/licsbas/lib/python3.11/site-packages/matplotlib/cbook/init.py", line 309, in process
func(*args, **kwargs)
TypeError: 'RectangleSelector' object is not callable
Traceback (most recent call last):
File "/home/neeraj/.pyenv/versions/miniconda3-latest/envs/licsbas/lib/python3.11/site-packages/matplotlib/cbook/init.py", line 309, in process
func(*args, **kwargs)
TypeError: 'RectangleSelector' object is not callable
Traceback (most recent call last):
File "/home/neeraj/.pyenv/versions/miniconda3-latest/envs/licsbas/lib/python3.11/site-packages/matplotlib/cbook/init.py", line 309, in process
func(*args, **kwargs)
TypeError: 'RectangleSelector' object is not callable
Traceback (most recent call last):
File "/home/neeraj/.pyenv/versions/miniconda3-latest/envs/licsbas/lib/python3.11/site-packages/matplotlib/cbook/init.py", line 309, in process
func(*args, **kwargs)
TypeError: 'RectangleSelector' object is not callable

Also , in time series i didnt get any displacement value , what can be issue for this as in velocity displacement graph i can see changes in values.

Screenshot 2023-08-24 144619
Screenshot 2023-08-24 144710

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yumorishita avatar yumorishita commented on June 25, 2024

I think the messages are just warning and you can ignore them.
You should select another point to plot the displacement because the first-shown point is the reference point which has zero displacement.

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nssuthar16 avatar nssuthar16 commented on June 25, 2024

i am exporting these velocity displacement as tiff file but i am unable to process these in arcGIS, how to do that so i can correlate on basemap.

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yumorishita avatar yumorishita commented on June 25, 2024

I cannot support the ArcGIS issue. Maybe your method of creating the GeoTIFF was incorrect.

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nssuthar16 avatar nssuthar16 commented on June 25, 2024

It's getting tiff output , as file is getting saved in tiff format but can't export that to arcGIS as its not saving cropped area as tiff , its saving whole image as tiff file.

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yumorishita avatar yumorishita commented on June 25, 2024

Please show the commands you ran.

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nssuthar16 avatar nssuthar16 commented on June 25, 2024

No specific commands in terminal , just saving them as tiff file like this.
Screenshot 2023-09-01 121318
Screenshot 2023-09-01 121340
Screenshot 2023-09-01 121404

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yumorishita avatar yumorishita commented on June 25, 2024

It is not GeoTIFF but a simple image tiff with no geographical information.

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shubhayanroychowdhury avatar shubhayanroychowdhury commented on June 25, 2024

i am exporting these velocity displacement as tiff file but i am unable to process these in arcGIS, how to do that so i can correlate on basemap.

you can use this command for tif file generation

LiCSBAS_flt2geotiff.py -i TS_GEOCml1clip/results/vel.mskd -p TS_GEOCml1clip/info/EQA.dem_par

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nssuthar16 avatar nssuthar16 commented on June 25, 2024

Tiff file has been extracted successfully. But I am getting a little bit of error in geolocation. Should I change the latitude and longitude and do processing once again. because I have taken a bigger area extent for clipping from 30.45 to 30.65 and 79.50 to 79.65 and my location lies at 30.55 and 79.56.

As you can see in attached photo red square is my desired location and green in what i am getting through geoTIFF.

Is tiff file on WGS 1984 44N ?
clip

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nssuthar16 avatar nssuthar16 commented on June 25, 2024

I tried another interferogram and it worked for that location. Thankyou so much for guiding me with this.
I will be in touch if I want to have another insight on my problem.

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