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Name: yuanjingnan
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Name: yuanjingnan
Type: User
QIIME2 worklflow. From raw data to a feature table.
Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more regions of interest. Please "watch" this repository for improvements in runtime, accuracy and annotations for GRCh38 human reference genome coming up soon.
ASCAT copy number R package
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
BAMixChecker: A fast and efficient tool for sample matching checkup
BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing
Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization
Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
Basic linear polygenic risk score to predict protein levels in CPTAC
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
CG - cancer genomics pipeline
CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-friendly interface. The software uses segmented data from either aCGH, SNP-array, whole-exome sequencing or whole-genome sequencing to assess sample profiles and CNA levels, establishing associations with molecular and clinical features. CNApp has three main sections: Re-Seg & Score, Region profile and Classifier model
Convertor for results of student's simulations in CSV to XLSX.
A part of R codes used for "Principal Components Analysis Based Unsupervised Feature Extraction Applied to Gene Expression Analysis of Blood from Dengue Haemorrhagic Fever Patients" https://www.nature.com/articles/srep44016
R scripts and supporting files for creating EMT state metrics for bulk RNAseq profiling of tissue samples
A collection of command line tools for working with sequencing data
DNA sequencing analysis notes from Ming Tang
Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"
Utility functions for FACETS
Finder of Somatic Fusion Genes in RNA-seq data
FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation
Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.