yongming-duan Goto Github PK

-16s-

对于细菌的16s分析过程，相关资料和工具的收集

ampir

antimicrobial peptide prediction in R

annotationdbi

Manipulation of SQLite-based annotations in Bioconductor

auto-draft

基于GPT4的文献总结工具.

bash_parser_blastp_muscle

A parser that given a protein fasta/multifasta and a two column text (first: species name, second: url link to the subject proteome), will perform a blastp analysis for the query against the proteomes, and will create an allignment and neighbor tree for each query protein.

bilibilirlearning

Use it with the bilibili vedios.

biocor

Package to calculate functional similarity between genes https://biocor.llrs.dev

clean

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

cola

A General Framework for Consensus Partitioning

delete-linux

the easy step to delete linux in dual systems

dge_workshop_salmon_online

espsim

Scoring of shape and ESP similarity with RDKit

ezknitr

Avoid the typical working directory pain when using 'knitr'

gfap

a software for annotating plant genes

ggclusternet

Microbial ecological network visualization clustering

ggcor

The copyright of ggcor belongs to HouyunHuang who closed the account of github. Refer to the Citation for details

ggplot2

An implementation of the Grammar of Graphics in R

ggsankey

Make sankey, alluvial and sankey bump plots in ggplot

ggvenndiagram

A 'ggplot2' implement of Venn Diagram.

gwena

Gene Co-expression Network analysis pipeline

helpful_commands

Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.

isee

R/shiny interface for interactive visualization of data in SummarizedExperiment objects

learn-bioinformatics

linux-command

Linux命令大全搜索工具，内容包含Linux命令手册、详解、学习、搜集。

markdown-portfolio

metablastr

BLAST Sequence Searches with R

metaboanalyst_docker

Docker for MetaboAnalyst 4.0

metabolomics_2022

Tutorials

microbiomestatplot

Interpretation and visualization of microbiome charts

modification-plots-in-r