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Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Source Code for 'Advanced R Statistical Programming and Data Models' by Matt Wiley and Joshua F. Wiley
Whole Exome/Whole Genome Sequencing alignment pipeline
Fast and accurate gene fusion detection from RNA-Seq data
2018 Recommended Papers to Read in Bioinformatics as Voted by Bioinformaticians
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
tools for adding mutations to existing .bam files, used for testing mutation callers
ATAC-seq lab for BIOINF545
:microscope: Path to a free self-taught education in Bioinformatics!
Bioinformatics Workflows
A curated list of resources for learning bioinformatics.
Bioinformatics with Python Cookbook, Third Edition
A project developed for the bioinformatics course at the University of Salerno 2016/2017. The goal of the project was to develop a classifier, based on pathways, to identify subclass of patients affected by tumors. The proposed methodology is divided into four steps: (i) Dimensionality reduction: since the gene expression data is high dimensional the DFP algorithm was used to identify the discriminant genes (ii) Pathways identification: the enrichment analysis is used to identify those biological pathways (KEGG or Reactome) that are statistically represented by the genes identified in the previous step (iii) Classification of the patients based on SVM: for each pathway a linear SVM is trained in cross validation. The most relevant genes are also identified. (iv) Graphical representation: a graph is construct to represent the pathways relationships The code was developed in R and Python.
Create Blogs and Websites with R Markdown
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
cBioPortal for Cancer Genomics
RStudio Cheat Sheets
ChIP-seq analysis notes from Tommy Tang
A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)
Circular visualization in R
Code depository for papers
Pipeline for copy number variant calling from Whole Exome sequencing data using CODEX
make complex heatmaps as well as self define annotation graphics
List of Computer Science courses with video lectures.
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.