yanyu-pan Goto Github PK
Name: YanyuPan
Type: User
Company: State Key Laboratory of Infectious Disease Prevention and Control
Bio: Public servant; Ningbo Custom, China Master of Public Health; China CDC
Location: Beijing
YanyuPan's Projects
cgmlst-dists
🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
cutseq
Extract sequence based on keywords of contig
down_ncbi_seq
根据acc number批量下载序列
ecoli_mv
STEC管理提取小工具
isfinder-sequences
Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biotoul.fr/)
mlst
:id: Scan contig files against PubMLST typing schemes
mlstdb
mlstfa
mob-suite
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
my_first_program-reverse_complement
Reverse Complement converts a DNA sequence into its reverse-complement counterpart.
removen
scaffold transform contig and rename contig name(>file_num).
run_crisprdetect_pipeline
批量查找CRISPR，并与现有spacer数据库比对分配序号
run_prokka_genome_feature_stats
提取prokka注释结果文件中的CDS,5S,16S,23S等个数信息
shovill
⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
sistr_cmd
SISTR (Salmonella In Silico Typing Resource) command-line tool
snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
snippy-
worknotes
My Daily Notes | 记录学习日常
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