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yaningyang's Projects

cutesv icon cutesv

Long read based human genomic structural variation detection with cuteSV

django-q icon django-q

A multiprocessing distributed task queue for Django

ikarus icon ikarus

Identifying tumor cells at the single-cell level using machine learning

janggu icon janggu

Deep learning infrastructure for genomics

maverick icon maverick

A Mendelian approach to variant effect prediction built in keras

minimap2 icon minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

ngmlr icon ngmlr

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

numba icon numba

NumPy aware dynamic Python compiler using LLVM

parapindel icon parapindel

A parallel version of Pindel to accelerate structural variation detection

sharex icon sharex

ShareX is a free and open source program that lets you capture or record any area of your screen and share it with a single press of a key. It also allows uploading images, text or other types of files to many supported destinations you can choose from.

simde icon simde

Implementations of SIMD instruction sets for systems which don't natively support them.

sniffles icon sniffles

Structural variation caller using third generation sequencing

svdss icon svdss

Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)

svpath icon svpath

An accurate pipeline for predicting the pathogenicity of human exon structural variants

windterm icon windterm

A professional cross-platform SSH/Sftp/Shell/Telnet/Serial terminal.

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