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badread

a long read simulator that can imitate many types of read problems

bindpredict

Prediction of binding residues for metal ions, nucleic acids, and small molecules.

colabdesign

Making Protein Design accessible to all via Google Colab!

diffdock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

esp

flapp

machine-learning-for-proteins

Listing of papers about machine learning for proteins.

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

neuralplexer

NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model

prosmith

prottrans

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

rfdiffusion_stable

Code for running RFdiffusion