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ancestry_pipeline

Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc

bayesprism

A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression

beyond-single-core-r

Short tour of parallel and foreach packages, and how to think about scaling data analyses

coca

R package for COCA: Cluster-of-Clusters Analysis

dge_workshop

flow

R-based genomics workflow management

hamfa

Hypoxia associated molecular feature analysis

maftools

Summarize, Analyze and Visualize MAF files from TCGA or in house studies.

pancan_aging

paris

PAn-canceR Inferred Synthetic lethalities (PARIS), a machine learning-based approach to predict cancer vulnerabilities

pgs_from_vcf

phial

Precision Heuristics for Interpreting the Alteration Landscape

prad_prs

Code associated with multi-ancestry prostate cancer PRS paper

qgg-labs

The computer labs for the 2019 Cornell class of quantitative genetics and genomics

scripts

skitools

General purpose mskilab R tools

tcga_aging_final

TCGA Aging Project

xcell

Cell types enrichment analysis

yajas