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algorithms

Minimal examples of data structures and algorithms in Python

alphamissense

atlas-cnv

Method to detect exonic CNVs in NGS Gene Targeted Panels

autopvs1

An automatic classification tool for PVS1 interpretation of null variants

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

bam-readcount

count DNA sequence reads in BAM files

bamdst

a lightweight bam file depth statistical tool

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

bioinformatics-skills

生物信息学技能提升，专注于工具使用与编程

bix

tabix file access with golang using biogo machinery

bwa-mem2

The next version of bwa-mem (WIP; not recommended for production uses at the moment)

canvas

Canvas - Copy number variant (CNV) calling from DNA sequencing data

cc2

centrifuge

Classifier for metagenomic sequences

clamms

CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.

clin-mngs

Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data

cn_learn

CN-Learn

cnv-patissier

Orchestrates your CNV bakeoff

cnv_facets

Somatic copy variant caller (CNV) for next generation sequencing

cnvkit

Copy number variant detection from targeted DNA sequencing

convading

Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage next-generation sequencing (NGS) data

cpp_new_features

2021年最新整理， C++ 学习资料，含C++ 11 / 14 / 17 / 20 / 23 新特性、入门教程、推荐书籍、优质文章、学习笔记、教学视频等

decon

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

doc-annovar

Documentation for the ANNOVAR software

ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

ensemblecnv

exomedepth

ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.