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2022_ace_granuloma_macrophage

Repository for scRNA-seq analysis of granuloma macrophage in the course of Salmonella Typhimurium persistent infection

acoel_reference_assembly

adjusttext

A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.

awesome-cv

:page_facing_up: Awesome CV is LaTeX template for your outstanding job application

aws-s3-glacier-restore

Helper script to easily restore files on S3 with Glacier storage class.

bag_of_stars

STAR mapping on slurm clusters in bags

bag_of_velocyto

Cluster submission of velocyto alignment for RNA velocity analysis.

bclose.vim

The BClose Vim plugin for deleting a buffer without closing the window

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

densityplot

A simple python plotting package for density and scatter plotting.

dotfiles_update

A simple bash script to update dotfiles

elpigraph.p

Python implementation of the Elastic Principal Graphs (ElPiGraph) method

fzf.vim

allow current buffer selection

gruvbox

Retro groove color scheme for Vim

image.nvim

🖼️ Bringing images to Neovim.

jupyter-vim-binding

Jupyter meets Vim. Vimmer will fall in love.

jupytext.vim

Vim plugin for editing Jupyter ipynb files via jupytext

markdown-preview.nvim

markdown preview plugin for (neo)vim

nemo

File browser for Cinnamon

nerdtree

A tree explorer plugin for vim.

nheatmap

A customizable and painless way to generate neat-looking heatmap.

nvim-r

Vim plugin to work with R

picom

A lightweight compositor for X11

pomobar

Pomodoro timer to polybar

purity

Vim colorscheme based on Kyoz/Purifier

pycircos

python Circos

quickwall

Set latest wallpapers from Unsplash from the commandline

ruvnord

easy on the eye nord colorscheme for vim

seqfold

nucleic acid folding

singlecell_snake

Snakemake pipeline for STAR alignment + htseq-count expression quantification for Smart-seq2 workflow.