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2012-paper-kmer-percolation

PNAS submission template

2016-bleaching-patterns

Data and code to support the analysis by McClanahan et al, "Evaluating temperature patterns and mechanisms influencing coral bleaching during the 2016 El Niño", accepted at Nature Climate Change

amazontreemortality

Codes from the analyses on spatial patterns of tree mortality across Amazonian forests published in the article Esquivel-Muelbert et al. 2020

amzface-model-ensemble-2019

The data and code is associated with Fleischer et al., Amazon forest response to CO2 fertilization dependent on plant phosphorus acquisition, Nature Geoscience (2019).

animal_gut_16s-uni

autumnphenologysps

awesome-public-datasets

A topic-centric list of high-quality open datasets in public domains. By everyone, for everyone!

baniel-et-al_2022_infant-gut-microbiome

Microbiome data, samples metadata, and R code for Baniel et al. 2022, Maternal effects on early-life gut microbiome maturation in a wild nonhuman primate

bbmo_niche_sea

Seasonality

beautiful-visualization-with-r

《R语言数据可视化之美》配套代码

bef_experiment_observational

examining the relationship between biodiversity and ecosystem functioning in experimental and observational data

befunderglobalchange

Data and code for the meta-analysis of biodiversity mediated effects of stressors and nutrients on decomposition

biodiversity-function-services_networks

R script used to perform the analyses from Felipe-Lucia et al. 2020 PNAS. Land-use intensity alters biodiversity - ecosystem function - service networks

biotime_bodysize

birds_frass_oak

R code accompanying paper on "Tritrophic phenological match/mismatch in space and time"

carbon-budget

Calculate gross GHG emissions, gross carbon removals (sequestration), and net flux from forests globally

causeandcorrelation

a series of R programs to accompany the book Cause and correlation in biology

citrus_reticulata_chachi

Bioinformatic code of citrus microbiome

climate-induced-reversal-of-tree-growth-patterns-in-a-high-elevation-tropical-forest

Data sets include: carbon isotopes formulas and raw data, tree ring raw data, climate data, oxygen isotopes and C:N ratios data, and integrated tree growth data.

co2_upscaling

Code to upscale biomass data from CO2 experiments

code

Organism body size structures the soil microbial and nematode community assembly at a continental and global scale

code_and_data_overallecosystemstability

coinfection

community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiome

cooccurrence

Supplementary data for co-occurrence manuscript

dabestr

Data Analysis with Bootstrap Estimation in R

design-and-analysis-of-experiments

Lecture Notes on Design & Analysis of Experiments

dispersal_experiment_2018

Dispersal experiment performed in March-August 2018

downloadsoilgridsv2

R scripts for downloading SoilGrids v2 data

earthnetwork

Microbial co-occurrence network inferred from Earth Microbiome Project