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ryanmboileau avatar ryanmboileau commented on September 12, 2024

Hi, I am having the same issue-- any chance you have found a solution @iichelhadi ?

Thanks for your consideration,
Ryan

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iichelhadi avatar iichelhadi commented on September 12, 2024

Hi, I am having the same issue-- any chance you have found a solution @iichelhadi ?

Thanks for your consideration,
Ryan

Hi Ryan, Apologies. I dont have any issues running squire anymore. I am not sure what caused this issue back then. Could you post your code so I can compare to mine and see?

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AbhijeetRPatil avatar AbhijeetRPatil commented on September 12, 2024

@ryanmboileau One possibility for such errors would be when trying to build a STAR index for a genome and the required files are missing. In case you are also trying to build a STAR index then make sure you have set all the parameters that are required to build the index. Forex, squire Fetch -b hg38 -f -r -g -c -x -p 8

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YayanFeng avatar YayanFeng commented on September 12, 2024

Hi, I am already set all those parameters when I build the index. However, I am still having the same issues. Do you have found a solution ?

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