Comments (4)
Hi, I am having the same issue-- any chance you have found a solution @iichelhadi ?
Thanks for your consideration,
Ryan
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Hi, I am having the same issue-- any chance you have found a solution @iichelhadi ?
Thanks for your consideration,
Ryan
Hi Ryan, Apologies. I dont have any issues running squire anymore. I am not sure what caused this issue back then. Could you post your code so I can compare to mine and see?
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@ryanmboileau One possibility for such errors would be when trying to build a STAR index for a genome and the required files are missing. In case you are also trying to build a STAR index then make sure you have set all the parameters that are required to build the index. Forex, squire Fetch -b hg38 -f -r -g -c -x -p 8
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Hi, I am already set all those parameters when I build the index. However, I am still having the same issues. Do you have found a solution ?
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Related Issues (20)
- consensus regions/length issue
- the meaning of clean outputs and how to make a custom bed file
- count function start from external BAM file HOT 1
- Issue installing SQuIRE
- Description of the count step output missing HOT 1
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- Generation of final BAM with re-distribute reads according to EM
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- issue with squire count:local variable 'prev_TE_ID' referenced before assignment
- Error with squire Call
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- Count does not consider strangeness HOT 1
- Call Output
- T2T Reference Genome HOT 1
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