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141009_simulate_tss_peak_data

some simple code to simulate chipseq reads around e.coli TSSs. Output is used to benchmark/test downstream tools.

4c

Tool for 4C data analysis

abruijn-container

euler_go

gosr

Tools for analyzing short read sequencing data

megalodon

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

ngcgh

Tools for producing pseudo-cgh of next-generation sequencing data

old_code_for_bed_files

from when i was first learning C...

python_import_problem

renee

A comprehensive quality-control and quantification RNA-seq pipeline

ropencvlite

Utility package to install OpenCV in R

slurm

Slurm: A Highly Scalable Workload Manager

slurmpipelinewithdependencies

This is a simple slurm pipeline implemented in BASH that uses SLURM's dependency capabilities

svg2slides

Creates a png or pdf file for each layer of a inkscape SVG file whose name matches 'slide[0-9]+'

wresch.github.io