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aln_stats_prot

Script producing protein alignment variants statistics

cogs108_repo

Krunk

crisprfinder

This is a group of scripts used to filter through large collections of sequences for the purpose of finding potential sgRNAs for CRISPR-cas9 systems amongst close homologs of antibiotic resistance genes.

examples

Example deep learning projects that use wandb's features.

kraken2

The second version of the Kraken taxonomic sequence classification system

lectures-fa19

Lecture files - Fall 2019

morbidostat_construction

Building Osterman Lab implementation of morbidostat

morbidostat_v2_construction

patric_gto_tools

Scripts to convert PATRIC gto format to other formats

pygame

pygame (the library) is a Free and Open Source python programming language library for making multimedia applications like games built on top of the excellent SDL library. C, Python, Native, OpenGL.

qbb2022-answers

rbseek_vis

visualize rbseq sequencing data after rbseq perl pipeline

rbseq_py

Track fitness of deletion mutants with a randomly barcoded random insertion library

sequencetoolsgabo

Programs used in the lab for various tasks

simulating_phage_bacteria_adsporption_kinetics

A dynamic and stochastic simulation of viral phage infections of bacteria.

subpop_decompose_gd

Decomposition of population deep-sequencing data into subpopulations using gradient descend algorithm.

subpop_decompose_mip

Decompose observed variants to subpopulations using mixed integer programming with pulp package,

tnseq

Fork of https://bitbucket.org/berkeleylab/feba/src/master/