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The skiing biophysicist

I'm currently working on an adaptive approach to microscopy of various biological systems. Originally coming from problems of single-molecule tracking using Matlab I have now shifted to using Python and ventured a little bit into Rust. In order to be able to customize Micro-Manager with some Plugins I have also done some programming in Java.

Our current project uses a neural network that detects division events in bacteria and mitochondria. We introduce this network into an active feedback loop that controls the acquisition speed of the microscope. With this we can capture division events in high temporal resolution over much longer times, with less photobleaching and reduced phototoxicity.

Please also visit https://stepp.one

Willi L Stepp's Projects

img_rust icon img_rust

Rust module for Python for fast image processing

pycro-manager icon pycro-manager

Python control of micro-manager for customized data acquisition

pymmcore-plus icon pymmcore-plus

A convenience layer on pymmcore (micro-manager) providing improved python UX and event management

tifffile icon tifffile

Read and write TIFF files. Forked from https://pypi.org/project/tifffile

tracking_gui icon tracking_gui

Program suite in Matlab for tracking and analysing single-molecule fluorescence assays on molecular motors.

useq-schema icon useq-schema

An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.

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