wkpalan Goto Github PK

aigo

annocript

Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts.

feeling-responsive

»Feeling Responsive« is a free flexible theme for Jekyll built on Foundation framework. You can use it for your company site, as a portfolio or as a blog.

go-map-doc

Latex documentation for GO-MAP pipeline to annotate GO terms to plants

go_utils

gograph

Neo4j Gene Ontology Graph

gokool-jekyll-theme

gomap-maize-analysis

graphviz-preview

GraphViz preview package for Atom text editor

icommands-cyverse

This is a singularity container for icommands compatible with CyVerse

interpro_rest

A rest api to get the description for the interpro scan signature accessions, some of which are not available from the results

jekyll-pubmed

A plugin to get the desired publication information from PubMed to include in jekyll site

maize-gamer-supp

pacbioapps

Singularity container for PacBio applications.

pitchfork

Prototyping pacbio build from github source

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

shiny-var

singularity-snpeff-snpsift

vennerable

Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries. It allows the display of area-weighted Venn diagrams and allows fine graphical control over the result.

wkpalan-gh-jekyll

The jekyll source code that generates the static page

workspacer

a tiling window manager for Windows