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Willy Rodríguez's Projects

3daroc icon 3daroc

#DAROC Course, starting in 2016

abm_epidemic icon abm_epidemic

Agent-Based Model to simulate infectious disease outbreaks

cornerstone3d-beta icon cornerstone3d-beta

Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.

countislands icon countislands

Estimating the number of islands under an n-island model

dhndiff icon dhndiff

Inferring parameters of the demographic history from the Number of Differences of two haploid sequences.

dishonestcasino icon dishonestcasino

Some python functions on the "Occasionally Dishonest Casino" example described in Durbin et al., “Biological Sequence Alignment” (Cambridge, ‘98)

emhmm icon emhmm

A python implementation of the Generalized EM for a Hidden Markov Model

factoringnumbers icon factoringnumbers

Python implementations of Fermat's factorization method and some improvements

iicr_qmatrix icon iicr_qmatrix

some R functions to compare the theoretical IICR and the IICR from simulated T2 values under different models

iicrestimator icon iicrestimator

A python script for estimate the Inverse Instantaneous Coalescent Rate from coalescent times simulated with the ms software.

microsdcheck icon microsdcheck

Check if a microSD really has the capacity that the system reports

ms-psmc icon ms-psmc

Useful scripts when applying the psmc to simulated data with ms

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