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ase

The methods

dge_workshop

easy_webshare_on_uppmax

Easy websharing of files on UPPMAX

gpmat

Matlab implementations of Gaussian processes and other machine learning tools.

gpy

Gaussian processes framework in python

jar3d

Java-based Alignment of RNA using 3D structure

just-the-docs

A modern, high customizable, responsive Jekyll theme for documention with built-in search.

kaggle

libsvm

maptocleave

The code of MapToCleave analysis.

matcha

multiway chromatin interaction, 3D genome, single-nucleus

nextflow-gpseq

Nextflow pipeline for processing of GPSeq data

ngi-rnaseq

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

pmtk3

Probabilistic Modeling Toolkit for Matlab/Octave.

scikit-learn

scikit-learn: machine learning in Python

scilife-python-course

scilifelab

Misc code snippets for Science For Life Laboratory

shogun

The Shogun Machine Learning Toolbox (Source Code)

snap

Stanford Network Analysis Platform (SNAP) is a general purpose network analysis and graph mining library.

so-simple-theme

A simple Jekyll theme for words and pictures.

sphinx_rtd_theme

Sphinx theme for readthedocs.org

start-git-github-fundamentals

github-starter-course created by GitHub Classroom

stringkernelsvm

Implementation of string kernel approach for SVM

teachingdemos

Bioinformatics related demos and tutorials using the R programming language