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16s_copy_num_normalize

Normalize sequences by 16S rRNA gene copy number based on rrnDB database.

amplicon-analysis

awesome-network-analysis

A curated list of awesome network analysis resources.

bef-scaling-ma

BEF meta-analysis of b code and data

betalink

MIRROR - beta diversity of species interaction networks

biodiversity

representativeness analyses

bioinfprotocols

Data for RAxML chapter in "Protocols in Bioinformatics"

blavaan

An R package for Bayesian structural equation modeling

chinamapjsondata

about china map json data，各个省市县的json数据都在里面，最外面的datas.json是全国的

co-expressionnetwork

Scripts and documentation of co-expression network analysis

co-occurrence-1

R scripts for performing co-occurrence analyses

community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiome

cooccur

Probabilistic Species Co-occurrence Analysis in R

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

creating-maps-in-r

Introductory tutorial on graphical display of geographical information in R.

dada2pp

Miscelaneous R functions to post-process dada2 results

delta_statistic

Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categorical trait and a phylogeny.

dement

Decomposition Model of Enzymatic Traits maintained by Steven Allison

doc

Dissimilarity Overlap Curve analysis

doing-meta-analysis-in-r

All R code and source files for the online guide "Doing Meta-Analysis with R: A Hands-On Guide"

download

🔴蓝灯最新版本下载 https://github.com/getlantern/download 🔴 Lantern Latest Download https://github.com/getlantern/lantern/releases/tag/latest 🔴

earthnetwork

Microbial co-occurrence network inferred from Earth Microbiome Project

easymicroplot

A easy R script plot for Microbiome analysis

ecological-sems-in-lavaan

Recreating SEM analyses from papers using the R lavaan package

effect

paper on effect sizes

enzgames

Enzyme microbial allocation

epicon.mycobiome

fastautils

Utilities for DNA/RNA sequence processing

forestmodel

fungal-bacterial-network-construction-and-analysis

R code for analyses in the manuscript "Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhizal Fungi across Soil Niches"