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bigfilewriter

A simple utility to create big files quickly

binarytree

An implementation of a Binary Tree in C

circularstringmatching

cnw

cNW: Circular Needleman-Wunsch

codeigniter

EllisLab's Open Source PHP Framework

csc

Circular Sequence Comparison

dpmatrix

An online Dynamic Programming matrix previewer

edsm

Elastic Degenerate String Matching

edso

EDSO (Elastic Degenerate Sequence Outputter)

edsrand

Random Elastic Degenerate Strings (EDS) generator (DNA)

extractchromosome

Extract chromosomes from large gzipped/uncompressed fasta files

generaterandomsequence

A utility to generate random DNA/Protein sequences and output them to a file

horspool

The Horspool exact pattern matching algorithm

impress

IMPReSS: A web portal for managing standardised phenotyping screens

impress_owl

The ontology for IMPReSS

iupacmm

Consensus sequence searching

kmp

Naive and KMP pattern searching algorithm

languageswithdirections

ISO-639-2 languages list with directions of text

libflasm

A library for Fixed Length Approximate String Matching

maw

MAW: a suite on the computation and application of Minimal Absent Words

maxshift

The MaxShift algorithm

maxshiftm

A generalised implementation of the MaxShift algorithm

meme-motif-format-parser

A MEME Motif Format parser

multi-edsm

Dictionary Matching in Elastic-Degenerate Texts

multi-shift-and

Multiple Shift-And exact pattern matching algorithm implementation

nw

NW: Needleman-Wunsch

phpobo

Open Biomedical Ontologies (OBO) File Format Parser written in PHP

pong

A simple Pong game written in Python using Pygame

qtsort

A linear time char sorting algorithm (alternative implementation of the Counting sort algorithm)

rabinkarp

An implementation of the Rabin-Karp exact pattern matching algorithm in Python