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Type: Organization
Type: Organization
Tools for working with agp files
Batch script for running entire GATK workflow
nextflow pipeline for running cellranger
Scripts used to perform analyses in Rice et al. (2023)
Clean up NCBI gtf to make them compatible with cellranger
docs for various Warren Lab stuff
GFF and GTF file manipulation and interconversion
Nextflow pipeline for running vg giraffe
scripts to run giraffe and related pre- and post-processing on slurm
Genotyping structural variants with pangenomes
Really simple utilities for reading and writing gtf files
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
Nextflow pipeline for scaffolding genome assemblies with Hi-C reads
Nextflow pipeline for polishing an assembly with long reads and racon
nextflow pipeline for finding structural variants using long reads
simple RepeatModeler/Masker pipeline
a nextflow pipeline for creating a pangenome with minigraph-cactus
randomly permute the locations of variants in a vcf
Nextflow workflow for purging haplotigs from a genome assembly
Python implementation of the Slingshot pseudotime algorithm
Single-Cell Analysis in Python. Scales to >1M cells.
Nextflow pipeline for polishing an assembly with short reads and freebayes
Pipelines and scripts for single-cell best practices
Single cell scripts from MU's IRCF
Easily download fastqs from SRA
Our lab wiki
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Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
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A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
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We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.