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wangchuang715's Projects
chip-seq-analysis
ChIP-seq analysis notes from Ming Tang
coolbox
Jupyter notebook based genomic data visualization toolkit.
dna-methylation-analysis
DNA methylation analysis notes from Ming Tang
gert
Simple git client for R
hic_tools
A collection of tools for Hi-C data analysis
learn-python
📚 Playground and cheatsheet for learning Python. Collection of Python scripts that are split by topics and contain code examples with explanations.
pandas-cookbook
Recipes for using Python's pandas library
pyflow-rnaseq
RNAseq pipeline based on snakemake
rna-seq-analysis
RNAseq analysis notes from Ming Tang
tadbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
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