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2d_high_content_speckle_sim

3d-map

Simulation, hardware I/O GUI, and data processing code for 3D-MAP

3ddpc

C++ Implementation of Digital Refocusing algorithm described in http://www.opticsinfobase.org/ol/abstract.cfm?uri=ol-39-5-1326

3dquantitativedpc

android-3d-phase

angle_selfcalibration

Self calibration algorithms for illumination angle recovery.

brief

1. Y. Xue, D. Ren, L. Waller, Three-dimensional bi-functional refractive index and fluorescence microscopy (BRIEF). arXiv [physics.optics] (2020), (available at http://arxiv.org/abs/2011.11574).

bsccm

Berkeley Single Cell Computational Microscopy dataset

caloptrics

CalOptrics is an open source fast and easy-to-use C++ library for CUDA-based GPU computing for Compuational Optical Imaging purposes. It uses an array-based function set which makes programming with CUDA easier than programming raw CUDA code, so it's main goal is to save time during gpu code development. The idea for CalOptrics was inspired by the GPU computing library ArrayFire: http://arrayfire.com/.

compcellscopeandroid

Latest development version of CellScope Android app and relevent code

compcellscopehardware

compcellscopeios

Latest development version of CellScope iOS app and relevent code

compcellscopetie

Android Application for Chromatic TIE Acquisition

deepautofocus

Single-shot autofocus on microscopes using deep learning

diffusercam

DiffuserCam Processing Code

diffusercam-tutorial

Build-your-own DiffuserCam tutorial

dpc

dpc_withaberrationcorrection

M. Chen, Z. F. Phillips, and L. Waller, Quantitative differential phase contrast (DPC) microscopy with computational aberration correction, Opt. Express 26(25), 32888-32899 (2018).

encodinginformation

fpm

fresnel-prop

Optics Functions

ledarraypcbdesigns

LED Array PCB Designs for various Arrays

lenslesslearning

Code for Lensless Learning Paper

miniscope3d

multi-layer-born

multi-slice

multiwienernet

novocgh

NOVO-CGH algorithm implemented in Matlab for 3D CGH

osajnl_bst

pattern_estimation_sims